Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1629 ATGACCCAGAGCAGAAAGCCCAGAAAGCCCAACCCGCAAGCCCGCGAAGCCCTACAGAACCACCCTTCTTCTTCGTTCTCCAGCTCCGGCATGAAACTCATCGTCCCCCTCCAGGGCGTGGTTCAGGGACGCGGAGGCCTTCTCCTCGGGACTCTCGTCCCCTGCGCGCTCTTCTACTTCCTCCAGCTCTACCTCAAACGACGCCGTTCCAACTTCTCCCCTCCCTCCCCCTCCGAACCCACCCTCCCACGCACCTCCTCCCGCTCCAGTTTGTCGACACGTGGCTCCATTTCCCGTGTCCGGGTCTCCAAGCTCGCCACGCAGATTTCCAGACCCGACGAGTCGCTCTATTACGTCGGGTTGGAGAGGGTTTCGCGAGATCCCTACGACGCGTTGGAGAATCCCAATGGGATTATTCAGTTGGGCTTGTCGGATAACAAGCTGTGCTTGGATTTGATAGGGGAATGGGTGGCACGGAACTTGGAAGGGTCCATCAGTGGCGGTGTTGGTCTGGGAATCAATGGGATTGTGCCGTATCAGACGTTTGATGGGGTCATGGAATTGAAAATGGCTTTGTCAGATTTTATGCATCAGGTGATTGGGGGATCAGTGAAATTTGACCCATCTAACATGGTACTAACAGCTGGGGCAACTCCTGCAATTGAGATATTGTCCTTCTGTTTGGCAGACCATGGAAATGCATTCCTTGTCCCTACACCATATTATCCTGGCTTTGACAGAGATGTAAGATGGCGTCCTGGGGTAGACCTAATACCTGTTCATTGTCGCAGTACTGACAATTTCGATTTAAATATCACTGCTCTTGAACAAGCATTTAGTCAAGCAAGAAAACGAGGAGTCAAAGTTCGTGGAATTCTAATTTCCAACCCTTCAAACCCTGTTGGCAATATGATGACACAAGACATGCTTTACAGTCTTTTAGACTTTGCTGAAGAGAAAAATATTCATATCATTGCTGATGAAGTATTTGCAGGCTCCACATATGGAAGTGAGAAGTTTGTGAGCATAGCTGAAATTCTTAATTCAGATTATATAGACAAGAGCCGGGTCCATATAATATATGGTCTGTCAAAAGACCTCTCGCTTGCTGGCTTTAGAGTCGGGGTTATATGTTCATTCAATGAGAGTGTTTTGGCTGCTGCCAAGAAGTTGAGTAGATTTTCCTCTATATCCGCTCCGACCCAGAGGTTAGTTACTTCAATGCTTTCAGATAAAAGATTTATTCGGGAGTACTTTGAAACCAACCAGAAAAGAATACGACAAGTGCACGATGAATTTGTGGGTTGTTTAAGTAAACTAGGAATCAAGTGTGCCAAGAGCAGTGCTGGTATGTACTGTTGGGCTGATATGAGTGGATTAATCCGACCTTATAGTGAGAAAGGAGAAATTGAATTATGGGAGAAGTTTTTGAGTGTTGCTAAGATCAATATAACTCCTGGGTCAGCCTGTCATTGCATAGAGCCAGGATGGTTTAGGATTTGTTTTACCACTATAACATTAGAGGAGATCCCTTTGGTAATTGAACGAATTAGGAAAGTTGTTGAAAGTTGTAATTCTTCTAGTTGA 1587 0.4631 MTQSRKPRKPNPQAREALQNHPSSSFSSSGMKLIVPLQGVVQGRGGLLLGTLVPCALFYFLQLYLKRRRSNFSPPSPSEPTLPRTSSRSSLSTRGSISRVRVSKLATQISRPDESLYYVGLERVSRDPYDALENPNGIIQLGLSDNKLCLDLIGEWVARNLEGSISGGVGLGINGIVPYQTFDGVMELKMALSDFMHQVIGGSVKFDPSNMVLTAGATPAIEILSFCLADHGNAFLVPTPYYPGFDRDVRWRPGVDLIPVHCRSTDNFDLNITALEQAFSQARKRGVKVRGILISNPSNPVGNMMTQDMLYSLLDFAEEKNIHIIADEVFAGSTYGSEKFVSIAEILNSDYIDKSRVHIIYGLSKDLSLAGFRVGVICSFNESVLAAAKKLSRFSSISAPTQRLVTSMLSDKRFIREYFETNQKRIRQVHDEFVGCLSKLGIKCAKSSAGMYCWADMSGLIRPYSEKGEIELWEKFLSVAKINITPGSACHCIEPGWFRICFTTITLEEIPLVIERIRKVVESCNSSS* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1629 528 Gene3D - 161 411 IPR015421 GO:0003824
Gso16g1629 528 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 362 375 IPR004838 GO:0003824|GO:0009058|GO:0030170
Gso16g1629 528 SUPERFAMILY PLP-dependent transferases 110 522 IPR015424 -
Gso16g1629 528 Pfam Aminotransferase class I and II 140 517 IPR004839 GO:0009058|GO:0030170
Gso16g1629 528 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 141 167 - -
Gso16g1629 528 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 173 189 - -
Gso16g1629 528 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 210 230 - -
Gso16g1629 528 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 232 253 - -
Gso16g1629 528 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 286 310 - -
Gso16g1629 528 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 322 345 - -
Gso16g1629 528 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 356 380 - -
Gso16g1629 528 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 388 411 - -
Gso16g1629 528 MobiDBLite consensus disorder prediction 72 95 - -
Gso16g1629 528 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 20 525 - -
Gso16g1629 528 PANTHER AMINOTRANSFERASE ACS12-RELATED 20 525 - -
Gso16g1629 528 MobiDBLite consensus disorder prediction 1 28 - -
Gso16g1629 528 Gene3D Aspartate Aminotransferase, domain 1 127 516 IPR015422 GO:0003824
Gso16g1629 528 CDD AAT_like 179 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1629 Gso-Chr16 36950972 36954669 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1629 K14270 - gmx:100800539 988.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1629 16 36950972 36954669 Gso16g1629 16 36950972 36954669 ECH
Gso16g1629 16 36950972 36954669 Gso9g1259 9 36040604 36044658 GST