Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1502 ATGGGAACATCGGTGCAGGTAACGCCACTGTGTGGAGTGTACAATGAGAACCCTCTCTCGTATTTGGTTTCCATTGATGGCTTCAACTTCCTCGTCGACTGTGGCTGGAACGACCACTTCGACCCTTCCCTCCTTCAACCCCTCGCCAGGGTAGCATCAACCATAGATGCTGTTTTGCTTTCACATGCGGATACACTTCATCTTGGTGCCCTTCCATATGCCATGAAGCAGCTTGGACTCTCTGCCCCGGTTTATTCAACGGAGCCTGTCTACAGATTGGGCCTTCTCACTATGTATGACCAGTACCTCTCAAGAAAGCAAGTGTCGGAGTTCGATCTGTTCACGCTGGATGATATTGATTCTTCTTTCCAGAGTGTAACGAGGCTAACATATTCTCAGAATCATCATTTCTCAGGCAAGGGAGAAGGAATCGTGATTGCACCTCATGTTGCTGGACATCTTTTGGGAGGTACTATTTGGAAAATTACAAAGGATGGCGAGGATGTCATATATGCTGTTGATTTTAATCATAGGAAAGAAAGGCATTTGAATGGAACTGTTCTAGGTTCTTTTGTGCGTCCAGCTGTTCTAATAACTGATGCTTACAATGCTTTGAACAATCAGCCTTACAGACGTCAAAATGACAAAGAATTTGGAGATATCTTAAAGAAGACTCTAAGGGAAGGTGGCAATGTATTATTACCTGTTGACACTGTTGGACGAGTGTTGGAACTTATTCTGATGTTGGAATCGTATTGGACTGATGAAAACTTGAACTATCCTATATACTTTCTTACATATGTTGCATCCAGCACAATTGATTATGTGAAGAGTTTCCTTGAGTGGATGAGTGATACCATAGCAAAGTCTTTCGAAAAAACTCGTGAAAATATATTTCTTTTGAAGTATGTCACCCTTCTTATTAACAAGACTGAGCTTGACAATGCTCCAGATGGTCCAAAGGTTGTTCTAGCATCTATGGCAAGTTTGGAAGCAGGCTTTTCTCATGAGATATTTGTTGAGTGGGCCAATGATGTAAAAAATCTTGTCCTTTTTACTGAAAGAGGCCAGTTTGCCACACTAGCTCGTATGCTTCAAGCTGATCCACCTCCAAAAGCTGTCAAAGTCGTTGTGTCCAAGCGTGTTGCTTTGGTTGGTGAAGAGCTAATAGCCTATGAAGAAGAGCAAAATCGAATAAAAAAAGAAGCTTTAAAAGCTAGTCTTATGAAGGAGGAAGAATTTAAAACATCTCATGGGGCTGATAATAATACTAGTGATTCAATGGTCATTGATTCTGGCAATAATCATGTACCACCTGAAGTGTCTGGTCCCAGAGGCGGAGGATACCGGGACATATTTATTGATGGATTTGTTCCCCCTTTGACAAGTGTTGCTCCAATGTTTCCCTGTTATGAGAATACATCAGAGTGGGATGATTTTGGAGAGGTCATAAATCCAGATGATTATGTAATTAAGGATGAAGACATGGACCAGACAGCAATGCATGGAGGTGATATAAATGGAAAACTAGATGAAGGTGCTGCAAGTTTGATACTCGATACAAAGCCATCAAAAGTTGTATCTGACGAAAGGACTGTGCAAGTCAGGTGCTCATTGGTTTACATGGATTTTGAAGGACGTTCAGATGGAAGATCCATTAAAAATATTCTATCTCATGTGGCTCCCTTGAAGCTGGTTTTGGTGCATGGATCAGCTGAAGCTACAGAGCATCTGAAGCAGCACTGCCTGAAGCATGTTTGTCCACATGTTTATGCTCCCCAATTGGAAGAGACAATTGATGTCACCTCTGATTTATGTGCTTACAAGGTTCTACTGTCCGAGAAGCTCATGAGTAATGTACTCTTCAAAAAGCTAGGAGATTATGAATTAGCTTGGGTTGATGCTGTAGTAGGGAAGACAGAAAATGACCCGCTTTCGCTGCTCCCTGTTTCTGGAGCCGCTCCTCCGCATAAATCTGTTCTTGTTGGTGATTTGAAATTGGCGGATATCAAACAGTTTCTCTCCAGCAAGGGTGTTCAGGTGGAATTTGCTGGTGGGGCTTTGCGTTGTGGTGAATATGTAACTCTACGGAAAGTTGGGGATGCAAGTCAGAAGGGTGGTGGTTCTGGTGCTCAACAAATAGTTATTGAGGGTCCTCTGTGTGAAGATTACTATAAAATTCGTGACTATCTGTATTCGCAGTTTTATTTGCTTTAG 2217 0.4213 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSLLQPLARVASTIDAVLLSHADTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQYLSRKQVSEFDLFTLDDIDSSFQSVTRLTYSQNHHFSGKGEGIVIAPHVAGHLLGGTIWKITKDGEDVIYAVDFNHRKERHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQNDKEFGDILKKTLREGGNVLLPVDTVGRVLELILMLESYWTDENLNYPIYFLTYVASSTIDYVKSFLEWMSDTIAKSFEKTRENIFLLKYVTLLINKTELDNAPDGPKVVLASMASLEAGFSHEIFVEWANDVKNLVLFTERGQFATLARMLQADPPPKAVKVVVSKRVALVGEELIAYEEEQNRIKKEALKASLMKEEEFKTSHGADNNTSDSMVIDSGNNHVPPEVSGPRGGGYRDIFIDGFVPPLTSVAPMFPCYENTSEWDDFGEVINPDDYVIKDEDMDQTAMHGGDINGKLDEGAASLILDTKPSKVVSDERTVQVRCSLVYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQLEETIDVTSDLCAYKVLLSEKLMSNVLFKKLGDYELAWVDAVVGKTENDPLSLLPVSGAAPPHKSVLVGDLKLADIKQFLSSKGVQVEFAGGALRCGEYVTLRKVGDASQKGGGSGAQQIVIEGPLCEDYYKIRDYLYSQFYLL* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1502 738 MobiDBLite consensus disorder prediction 412 444 - -
Gso16g1502 738 Gene3D - 7 260 IPR036866 -
Gso16g1502 738 SMART Beta_Casp_2 242 365 IPR022712 -
Gso16g1502 738 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 1 737 IPR027075 GO:0005847|GO:0006378|GO:0006379
Gso16g1502 738 Pfam Cleavage and polyadenylation factor 2 C-terminal 649 735 IPR025069 -
Gso16g1502 738 Pfam Beta-Casp domain 242 365 IPR022712 -
Gso16g1502 738 Pfam Metallo-beta-lactamase superfamily domain 22 188 IPR001279 -
Gso16g1502 738 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 532 583 IPR011108 -
Gso16g1502 738 Coils Coil 392 412 - -
Gso16g1502 738 SUPERFAMILY Metallo-hydrolase/oxidoreductase 5 601 IPR036866 -
Gso16g1502 738 CDD CPSF2-like_MBL-fold 8 203 IPR035639 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1502 Gso-Chr16 35252668 35264977 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1502 K14402 - gmx:100796817 1453.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1502 16 35252668 35264977 Gso16g1502 16 35252668 35264977 ECH
Gso16g1502 16 35252668 35264977 Gso9g1121 9 32200649 32220760 GST