Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1329 ATGGACACCAAAGGGAGACTAGTTGCAGGGTCTCATAACAGGAATGAGTTTGTTCTTATCAATGCTGATGAAACTGCAAGAGTAGCTGTCACAGAATTAAGTGGTCAAATTTGTCAGATCTGTGGGGATGAGCTGGAAGTTACTGTGAATGGGGAGCCATTTGTTGCTTGCAATGAATGTGCATTCCCTGTGTGCAGACCTTGTTATGAGTATGAAAGAAGAGAGGGCAACCAAGTTTGTCCTCAGTGTAAAACCAGATATAAGCGCATCAAAGGTAGTCCTAGAGTTGAGGGTGATGAAGAAGAGGATGATACTGATGATTTAGAAAGTGAGTTTGATATTGGGAGTGTGTTCTCTGCTCGCCTTAACTATGGTTCACAGGTGAATGGTTCAGTGATCCACGCACCATCAGAGTTTGATGCAGCTTCGGTGGCTTCTGAGATCCCTCTCCTAACATATGGTCAAGAGGATGTCGGCATTTCTGCTGATAAACATGCTCTTATTCTTCCTCCATTCACGGCTCGAGGGAAACGGGTTTATCCCATGCCTTTTCCTGATTCATCTGTACCTGTTCAACCAAGACCTATGGATCCTAAAAAGGATATTGCTGTTTATGGATATGGAAGTGTTGCATGGAAGGAACGGATGGAGGATTGGAAGAAAAAACAAAGTGAAAAACTTCAGGTTGTTAGACATGAAGGGGATAAAGATAGTGATGAGCTGGATGATCCTGACTTGCCAAAAATGGATGAAGGCAGACAGCCACTTTGGAGAAAGTTGCCTATTAGTTCAAGCAGGATAAATCCATACAGAATCATAATAGTACTTCGGATTGCCATTCTTTGCCTCTTTTTTCATTATAGAATCCTCCATCCAGTCAATGATGCATATGCATTGTGGCTCACATCAGTAATATGTGAAATCTGGTTTGCTGTGTCATGGATTTTTGATCAGTTTCCAAAATGGAGCCCAATTCTGCGAGAAACATACCTTGATCGTTTATCTCTTCGGTATGAGAAAGAAGGAAAGCCATCTCAGTTATCTGATATAGACGTGTTCGTTAGTACAGTGGACCCTATGAAGGAACCTCCACTCATTACTGCAAACACAGTTCTGTCTATCCTTGCTGTGGATTATCCGGTGGACAAGGTTGCATGCTATGTTTCAGATGATGGTGCTGCCATGCTTACATTTGAAGCACTCTCCGAGACTTCTGAGTTTGCAAGGAAATGGGTTCCATTCTGTAAGAAGTTCTGCATTGAACCACGAGCTCCTGAATGGTATTTTGCTCAGAAGGTTGACTACTTGAAGGATAAGGTGGATGCCACATTTATAAGAGAACGTCGTGCCATTAAGAGGGAGTATGAAGAGTTCAAAGTGAGGATTAATGCATTGGTGGCTTTGGCACAAAAGGTTCCTGAGGATGGTTGGACAATGCAGGATGGTACTCCATGGCCCGGGAACAATGTCAGAGATCATCCCGGAATGATACAAGTTTTCCTTGGTCAGAATGGTGTTCGTGACATTGAAGGAAATGAATTACCTCGTCTTGTCTATGTGTCTCGTGAGAAAAGACCTGGATATGATCACCACAAAAAAGCTGGGGCTATGAATGCTTTGGTGAGAGTCTCAGCAATAATCACCAATGCTCCCTATGTACTGAATGTTGATTGTGATCACTACATAAATAACAGTAAGGCCCTTCGTGAAGCCATGTGCTTCATGATGGATCCTACATCAGGGAAAAAAATATGCTATGTACAGTTTCCTCAAAGATTTGATGGGATTGATCGTCATGATAGATACTCGAATCGCAATGTTGTATTCTTTGATATCAATATGAAAGGTTTAGATGGCATCCAAGGACCAATATATGTGGGAACTGGGTGTGTCTTCAGGAGGCAGGCATTTTATGGATGTGATGCCCCTACTTCGAAGAAAGCACCAAGGAAGACATGTAACTGTTGGCCTAAATGGTGCTGCTGTCTGTGTTGTGGATCTAGGAAGAAAAAGATTAAAGCAAAGTCCAGTGTGAAAAAGAAGATAAAGAATAAGGATGATTTAAAGCAAATGCATGCACTAGAAAATATTGAAGAGGGAATTGAAGGAATTGACAATGAGAAATCATCATTAATGTCTCAATCGAAGTTTGAGAAGAAGTTTGGGCAATCATCTGTTTTCATAGCTTCAACACTCTTGGAAGATGGGGGTGTTCCAAAAGCAGCAAGTTCCGCAACACTCTTGAAAGAGGCCATCCATGTAATTAGTTGTGGTTATGAAGATAAGACAGAATGGGGGAAAGAGGTTGGGTGGATATATGGCTCAGTTACAGAAGATATTTTAACAGGTTTCAAGATGCATTGTCATGGTTGGAGATCTGTGTACTGCATGCCAAAAAGGCCTGCTTTTAAGGGTTCAGCTCCTATAAATCTCTCAGATCGTCTGCATCAAGTTCTTCGGTGGGCACTTGGATCTGTTGAGATCTTTTTCAGTAGGCATTGTCCCATATGGTATGGTTATGGTGGTGGCTTGAAATCGCTGGAACGATTCTCTTACATAAACTCAGTAGTTTATCCTCTGACTTCAATTCCCTTAATCGCCTACTGCGCATTGCCAGCGGTCTGTCTGCTCACTGGGAAGTTCATTGTCCCCGAGATAAGTAACTATGCCAGTATCATTTTCATGGCCCTCTTCATCTCTATAGCTGCAACTGGCATCCTGGAAATGCAGTGGGGAGGTGTCGGTATACACGACTGGTGGAGGAATGAGCAGTTCTGGGTCATTGGTGGTGCCTCCTCACATCTCTTTGCTCTCTTTCAGGGTTTGCTCAAAGTTCTGGCAGGAGTCAACACAAACTTCACAGTCACATCCAAAGCAGCAGATGATGGAGAGTTTGCTGAACTCTACATCTTCAAGTGGACATCCTTGTTGATCCCTCCCTTGACCCTACTAATCTTAAACATCATTGGAGTCATTGTTGGTGTCTCAGATGCCATAAACAATGGCTATGATTCATGGGGTCCTTTGTTTGGGAGGCTATTTTTTGCCCTTTGGGTCATTGTCCACCTTTACCCTTTCCTCAAGGGTGTCATGGGAAAACAAGAAGGTGTTCCTACCATCATTTTGGTTTGGGCTATTCTTCTGGCTTCCATATTGACACTACTTTGGGTGAGAATCAACCCATTCTTGGCCAAAAATGATGTGGTGCTGGAAATTTGTGGATTGAATTGTGACTAA 3237 0.4269 MDTKGRLVAGSHNRNEFVLINADETARVAVTELSGQICQICGDELEVTVNGEPFVACNECAFPVCRPCYEYERREGNQVCPQCKTRYKRIKGSPRVEGDEEEDDTDDLESEFDIGSVFSARLNYGSQVNGSVIHAPSEFDAASVASEIPLLTYGQEDVGISADKHALILPPFTARGKRVYPMPFPDSSVPVQPRPMDPKKDIAVYGYGSVAWKERMEDWKKKQSEKLQVVRHEGDKDSDELDDPDLPKMDEGRQPLWRKLPISSSRINPYRIIIVLRIAILCLFFHYRILHPVNDAYALWLTSVICEIWFAVSWIFDQFPKWSPILRETYLDRLSLRYEKEGKPSQLSDIDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFCIEPRAPEWYFAQKVDYLKDKVDATFIRERRAIKREYEEFKVRINALVALAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNELPRLVYVSREKRPGYDHHKKAGAMNALVRVSAIITNAPYVLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAFYGCDAPTSKKAPRKTCNCWPKWCCCLCCGSRKKKIKAKSSVKKKIKNKDDLKQMHALENIEEGIEGIDNEKSSLMSQSKFEKKFGQSSVFIASTLLEDGGVPKAASSATLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPIWYGYGGGLKSLERFSYINSVVYPLTSIPLIAYCALPAVCLLTGKFIVPEISNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAADDGEFAELYIFKWTSLLIPPLTLLILNIIGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGVMGKQEGVPTIILVWAILLASILTLLWVRINPFLAKNDVVLEICGLNCD* 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1329 1078 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 111 IPR013083 -
Gso16g1329 1078 PANTHER CELLULOSE SYNTHASE 3 1077 - -
Gso16g1329 1078 Pfam Cellulose synthase 350 1068 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gso16g1329 1078 SUPERFAMILY RING/U-box 29 106 - -
Gso16g1329 1078 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 3 1077 - -
Gso16g1329 1078 Coils Coil 694 714 - -
Gso16g1329 1078 MobiDBLite consensus disorder prediction 227 252 - -
Gso16g1329 1078 CDD mRING-HC-C4C4_CesA_plant 36 86 - -
Gso16g1329 1078 SUPERFAMILY Nucleotide-diphospho-sugar transferases 363 877 IPR029044 -
Gso16g1329 1078 Pfam Zinc-binding RING-finger 31 104 IPR027934 -
Gso16g1329 1078 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 496 646 IPR029044 -
Gso16g1329 1078 ProSiteProfiles Zinc finger RING-type profile. 38 84 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1329 Gso-Chr16 32701106 32709912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1329 1 1077 Glycosyltransferase AT5G64740 78.967 0.0 1767
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1329 K10999 - gmx:100798759 2137.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1329 16 32701106 32709912 Gso2g0664 2 6873260 6881467 GST
Gso16g1329 16 32701106 32709912 Gso10g2001 10 46989732 46995999 PCT
Gso10g2001 10 46989732 46995999 Gso16g1329 16 32701106 32709912 PCT