Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2001 ATGGATACCAAGGGGAGACTGGTTGCAGGGTCACATAACAGGAATGAGTTTGTTCTCATCAATGCTGATGAAACTGCAAGAGTGAATGCTGTTACAGAATTGAGTGGACAAATTTGTCAGATCTGTGGGGATGAGATAGAGGTTACTGTTGATGGTGAACCATTTGTTGCTTGCAATGAATGTGCATTCCCTGTGTGTAGACCTTGCTATGAGTATGAAAGGAGAGAGGGAAACAAAATTTGCCCTCAGTGCAAAACCATATACAAGCGCCTAAAGGGTAGTCCTAGAGTTGAGGGTGATGAGGAAGAAGAGGACATTGATGATTTGGAAAATGAGTTTGACATTGGAAGCAATATCAGGCATGACCCTCATCACGTTGCTGAGGCCTTGCTCTCGGCTCGCCTCAATGCTGCCCGTGGTTCACAAATGAACGCTCCAGGGATCACCACACCATCAGAGTTTGATGCAGCTTCTGTGGCGGCTGATATTCCTCTCCTGACATATGATCACGAGGATGTTGGGATTTCTGCTGATAAACATGCTTTAATTATTCCCCCATTCATGCATCATGGGAAACGGGTTCATCCAATGCCTCCTGATTCATCTGTGCCAGTTCAACCCAGACCTATGGATCCTAAAAAAGATTTAGCAGTTTATGGATATGGAAGTGTCGCATGGAAGGAACGAATGGAGGAATGGAAGAAAAGGCAGAATGAAAAAATTGAGGTGGTTAAGCATGAAGGGGGTAATGATGGTGGGAAAAATGGTGATGAGCTTGATGATCCAGATTTGCCAAAAATGGATGAAGGCAGACAGCCACTGTGGAGGAAGTTGCCAATTAGCCCAAGCAAGATTAATCCCTATCGAATTATAATAGTACTCCGGATTGCTGTTCTTGGTCTCTTTTTCCATTATAGAATTCTCCACCCGGTCAATGATGCATATGCATTGTGGCTAACATCAGTAATATGTGAAATCTGGTTTGCTGTGTCTTGGATTTTGGATCAGTTTCCCAAATGGTGCCCAATTGAGAGAGAAACATACCTTGATCGTTTGTCATCGAGGTATGAGAAAGAAGGAAAGCCATCTGAATTAGCTGATATAGACGTTTTTGTTAGTACAGTAGATCCTATGAAAGAACCTCCACTTATAACTGCAAATACAGTACTATCCATCCTTGCTGTAGATTATCCAGTGGAGAAAGTTTCATGTTATGTCTCAGATGATGGTGCAGCTATGCTGACATTTGAAGCCATTTCAGAGACTTCAGAGTTTGCAAGAAAGTGGGTTCCGTTCTGTAAGAAGTTCAACATTGAACCTCGGGCTCCTGAGTGGTATTTTGCTCAAAAGGTTGACTATCTGAAAGACAAAGTGGATGCAACATTCATCAGGGAGCGTCGTGCTATTAAGAGGGAGTATGAAGAGTTCAAAGTGCGTATCAATGCATTGGTTGCAATGGCACAAAAGGTTCCTGAGGATGGCTGGACAATGCAGGATGGGACTCCGTGGCCCGGGAACAGTGTCAGAGATCATCCTGGAATGATTCAGGTTTTCCTTGGTCAAAATGGTATTCATAATATTGAAGGGAATGAGTTACCTCGTCTTGTCTATGTGTCACGTGAGAAAAGACCAGGATATGAACACCACAAAAAAGCTGGTGCTATGAATGCCTTAGTGCGAGTCTCAGCAGTCATATCAAATGCTCCTTACCTACTCAATGTTGATTGTGATCACTACATAAACAACAGCAAAGCACTTCGTGAAGCCATGTGCTTCATGATGGATCCTACATCAGGGAAAAAAATATGCTATGTACAATTTCCTCAAAGATTTGATGGGATTGATCGTCATGATAGATACTCAAATAGAAATGTTGTATTCTTTGATATAAACATGAAAGGTTTAGATGGCATCCAAGGACCAATATATGTGGGAACTGGGTGTGTCTTTAGGCGGCAGGCGCTCTATGGATATGATGCCCCTGCTACGAAGAAACCACCAAGGAAAACCTGTAACTGTTGGCCCAAATGGTGCTGCCTGTGTTGTGGATCTAGGAACAAGAATAGGAAAGTGAAGTCAGGTCCAAGAAAGAAAATAAAAAACAAGGATGCTACAAAGCAAATACATGCACTAGAAAATATTGAAGAGGGAATTGAAGGAATTGACAGTGAGAAGTCATGGTTAATGTCACAACTAAAATTTGAGAAAAAATTTGGGCAATCAGCTGTTTTCATAGCCTCAACACTTATGGAAGATGGGGGTATTCTAAAAGGAGCAACTTCTGCATCACTCTTGAAAGAAGCCATTCATGTCATCAGTTGTGGTTATGAAGATAAGACAGAGTGGGGGAAAGAGGTTGGATGGATATATGGTTCTGTTACAGAAGATATATTAACAGGTTTCAAGATGCACTGTCATGGTTGGCGATCCGTGTACTGCATGCCTAAAAGGCCTGCTTTTAAGGGTTCTGCTCCCATAAATCTTTCAGATCGTCTGCATCAAGTTCTCCGTTGGGCACTTGGATCTGTTGAGATCCTGTTGAGTAAGCATTGTCCTATATGGTATGGATATGGTTGTGGCTTGAAATGGCTGGAGCGTTTTTCTTACATAAACTCGGTCATTTATCCTTTGACATCACTTCCCTTAATTGCCTATTGCACCTTGCCGGCTGTCTGTCTTCTCACTGGAAAGTTCATAGTCCCTGAGATTAGCAACTATGCCAGTATCATTTTCATGGCACTCTTCATCTCCATAGCTGTGACTAGCATCCTTGAAATGCAGTGGGGAGGTGTTGGCATACATGACTGGTGGAGGAATGAGCAGTTCTGGGTCATTGGTGGTGCCTCCTCACACCTCTTTGCTCTCTTCCAGGGTTTGCTCAAGGTTCTGGCAGGAGTTAACACAAACTTCACAGTCACATCAAAAGCTGCGGACGGCGGAGACTTTGCTGAACTCTACCTCTTCAAGTGGACATCATTGTTGATCCCTCCTTTGACCTTGCTCATCATAAACATAATAGGAGTTATTGTAGGTGTTTCAGATGCAATAAACAACGGCTATGATTCATGGGGTCCCCTATTTGGTAAGCTATTTTTTGCTCTTTGGGTCATTGTCCATCTTTACCCCTTCCTCAAGGGAGTCATGGGAAAACAGGAAGGTGTTCCCACCATCATTTTGGTTTGGGCTATTCTTCTGGCTTCAATCTTCTCACTTCTGTGGGTGAGGATCAACCCATTTTTGTCAAAAGGTGGCATTGTGTTGGAACTTTGTGGCTTGAATTGTGACTAG 3288 0.4291 MDTKGRLVAGSHNRNEFVLINADETARVNAVTELSGQICQICGDEIEVTVDGEPFVACNECAFPVCRPCYEYERREGNKICPQCKTIYKRLKGSPRVEGDEEEEDIDDLENEFDIGSNIRHDPHHVAEALLSARLNAARGSQMNAPGITTPSEFDAASVAADIPLLTYDHEDVGISADKHALIIPPFMHHGKRVHPMPPDSSVPVQPRPMDPKKDLAVYGYGSVAWKERMEEWKKRQNEKIEVVKHEGGNDGGKNGDELDDPDLPKMDEGRQPLWRKLPISPSKINPYRIIIVLRIAVLGLFFHYRILHPVNDAYALWLTSVICEIWFAVSWILDQFPKWCPIERETYLDRLSSRYEKEGKPSELADIDVFVSTVDPMKEPPLITANTVLSILAVDYPVEKVSCYVSDDGAAMLTFEAISETSEFARKWVPFCKKFNIEPRAPEWYFAQKVDYLKDKVDATFIRERRAIKREYEEFKVRINALVAMAQKVPEDGWTMQDGTPWPGNSVRDHPGMIQVFLGQNGIHNIEGNELPRLVYVSREKRPGYEHHKKAGAMNALVRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPATKKPPRKTCNCWPKWCCLCCGSRNKNRKVKSGPRKKIKNKDATKQIHALENIEEGIEGIDSEKSWLMSQLKFEKKFGQSAVFIASTLMEDGGILKGATSASLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSKHCPIWYGYGCGLKWLERFSYINSVIYPLTSLPLIAYCTLPAVCLLTGKFIVPEISNYASIIFMALFISIAVTSILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAADGGDFAELYLFKWTSLLIPPLTLLIINIIGVIVGVSDAINNGYDSWGPLFGKLFFALWVIVHLYPFLKGVMGKQEGVPTIILVWAILLASIFSLLWVRINPFLSKGGIVLELCGLNCD* 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2001 1095 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1094 - -
Gso10g2001 1095 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Gso10g2001 1095 Pfam Cellulose synthase 368 1083 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gso10g2001 1095 MobiDBLite consensus disorder prediction 246 266 - -
Gso10g2001 1095 Pfam Zinc-binding RING-finger 31 105 IPR027934 -
Gso10g2001 1095 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Gso10g2001 1095 SUPERFAMILY Nucleotide-diphospho-sugar transferases 381 895 IPR029044 -
Gso10g2001 1095 SUPERFAMILY RING/U-box 27 107 - -
Gso10g2001 1095 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 518 664 IPR029044 -
Gso10g2001 1095 CDD mRING-HC-C4C4_CesA_plant 37 86 - -
Gso10g2001 1095 PANTHER CELLULOSE SYNTHASE 1 1094 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2001 Gso-Chr10 46989732 46995999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2001 1 1094 Glycosyltransferase AT5G64740 78.091 0.0 1756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2001 K10999 - gmx:100806786 2087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2001 10 46989732 46995999 Gso10g2001 10 46989732 46995999 ECH
Gso16g1329 16 32701106 32709912 Gso10g2001 10 46989732 46995999 PCT
Gso2g0664 2 6873260 6881467 Gso10g2001 10 46989732 46995999 PCT
Gso10g2001 10 46989732 46995999 Gso16g1329 16 32701106 32709912 PCT
Gso10g2001 10 46989732 46995999 Gso2g0664 2 6873260 6881467 PCT