Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0942 ATGTTTGTGAAGAAACTCGTGGAGAAAGCTTCCATAAAGAAGACTGGTGGAAATTCATCAGATGGATTAAAAGCTAGTGATGTAGATCCACGGTTGGTGTTTCATCATGGAGTGCCATCTGGTGGTGCCAAGTTCGCCTATGACACCATTCAGAGGATCCTGGCTCTTTCTACCAAGGATGGCCAGATTAAACTCTATGGAAAAGATAATGCTCAAGCCATGCTTGAATCTAGTGAGCCCCTGCCTAGCAAGTTTCTACAGTTCATCCAGAACCAAGGCGTCCTTATAAATGTCACTTCCAACAACCATATTGAGGTTTGGGACATAGACAAGAAACTGTTGTCTGATGTGTACATGGCTAAAGAAGAAATCACTTCCTTTGCAGTCATTCATCATAGCCTCTATATGTACATTGGACATTCTAATGGTAATATTTCAGTTTTGAAGCTTGACCAAGAGCCATCATGGCATTTGGTTCAGATGAAATACACCATACCTCTCTCAGCTTCCTATGGGAATTCTGAAGTGTCTGATGATACTGTTGTGACGCATATACTGCCTCAACCAGCAGCTGAAAGTAAGAGGGTTCTCATAATCTTTAGAAATGGTCAAATGATATTATGGAATATTCGGGAAAGTAGATCTATTTTCAAAACTGGTGAAAATATGTTGCAGCCACTGCATACTGAAACAAAAAAAGTGACTTCTGCATGTTGGGTGTGCCCTTTTGGAAGTAAAGCAATTGTAGGGTACAACAATGGAGAGCTCTTCATTTGGAGCATCCGTTCTCTAAATATAGGAAATGGTTCAGCATCTGAACATAGTTATCAAAATACTCCTTTGCTCAAACTTAACTTAGGATACAAGTCTGACAAAATTTCCATAGGATCAATAAAATGGGTTTATGCTGGAGGAAAGGCTAGTCGACTATATATTATGGGAGCCTCTGACTGTGCAACTTCAAACTTGTTGCAGGTAGTGTTGCTGAATGAGCATACAGAAGCTCGCACAATTAAGCTTGGACTTCATTTGTCTGAATGTTGTATTGACATGGAGATCATATCAACTTCAACTGAGCAAAGCAAGAATAAACAAGATTCTTTCATTTTGCTTGGGAAGTCAGGCCATCTATATCTGTATGACGATATTTTGATTGAAAGGTATCTGCTACAATGCCAATCTAAGTCCACACCATCACTTCCAAAGGAGGTAACTGTAAAGTTACCACTGGCAGAATCAAGCATCACAACAGCAAAATTCATCTCCAACAATCCCAATGTATTAACATTTGAAGATGAGTATTACAGACAGCTGATCACAAGCTATCCACTGTTTGTTCCTGTTGAAACAAATCAAAAAGATGAGATTAGCCTGAGTTCTGCCAAATTTACAGGATTTTCTAAAGTTCAAAACTTGTACATAACTGGACACAGCAATGGAGCCATAAACTTCTGGGATGCTTCATGCCCCATTTTCACTCCAATTTTACAATTGAAGCAACAGAGTGAAAATGACTGTTCATTAAGTGGTATACCCTTGACAGCATTATACTTCGATAGCAACTCCCCACTTCTTGTTTCTGGTGACCAGAGTGGAATGGTTTGTGTCTTTAGATTCAAAACTGAACCATATGCCACTAACAGCTTCATGTCTCTTACTGGAGGTACAAAGAAAGGGACTGATCATATAATCCAAAGTGTGAAACATGTAAAGATCAATGGTGCCATTCTGTCATTGAACATAGATCCCAGCTTGATGCATCTTGCTGTTGGTTCTGATCAGGGACATGTTTCAGTTTTTAACATAGATGGCCCAACTTTGTTATACCAGAAACATATTGCCAGTGAAATTTCTGCTGGTATCATCTCTCTGCAGTTCCTAACCAGCAGTTTACATGGTTTTGAAAAAAACATTTTAGCAGTTGGAACAAAAGATTCATCTGTTCTGGCACTAGATAAAGAAGCTGGAAACACACTGGGCACGGGAACTATTCATCCTAAGAAGCCCTCTAAAGCTCTATTTATGCAGGTTTTGGATGGACAAGGTGCACCGGTCAATGGATCGATTACAAAAGATGGATTAGAGTCGAGCGAAAGGAATCATATTGAGGATGCAACAACAAAGCAACAGTACATTTTGCTTTGTTCTGAGAAAGCTTTATATGTCTATTCATTGGTGCATGCGATTCAGGGAGTTAAAAAGGTGCTATACAAGAAAAGGTTTCATTCCTCTACGTGTTGCTGGGCATCAACATTTTACAGCCCTTCTGATGTTGGCCTTATACTCATTTTTACAAGTGGAAAAGTAGAATTAAGGTCTTTGCCAGAGTTGTCCCTAATTGTGGAGACTTCAATTAGAGGTTATAATTATTCTCCTCCAAAATTGAAGTCATTTTCTGGCTGCCAGATATGTTGTTCATCCAAAGGAGATCTTGTTTTGGTGAACGGTAACCAAGAATTTTTTGTCGTCTCGCTGTTGGTGCAAAGAAATATTTTCAGGCTTTTGGACTCTATTAGCTGCATCTACAGGAAAAAAATGATGCTGTCGCCAGAAGTGTTTGTTCCTAGCCCAGTCATCTATAAGGAAAAGAAAAAGGGTATATTCAGCTCTGTTATCAAAGATTTTGCTGGCAGTAAAGAAAAGCATGCTCCCATATTGGAAACCGAAGATACTACAGAAAGCATCCAGGAACTCTCAGCTATCTTCTCAAATGAAAATTTTCCATGTGATGCTGATAATAATGATAATCTGACTGTTGATGAAGATGAGCTTGAATTAAACATAGATGACATTGACCTAGACGATCATGAAGAAAAACACAAAGATCAAAGTATATTGGGAGCTCTTAATAAGAAGAAATTGACTGGAAAGTTTCAGGCTCTAAAAGGTAGATTGAAGGAGATGAAGGGCAACATCCAGAAAACATCAAGTAAGGAAGAGCAGCAAGATGAGCAAGCTGGTGCAGTCGATCAAATCAAGAAGAAATATGGATTTTCTTCTTCCAACGAAACAAGCTTTGCTAAATTGGCAGAAAGCAAGCTGCAGGAGAACATGAAAAAATTGCAGGGTATCAACCTTCGAACCACAGAAATGCAAGATAAAGCAAAATCATTTTCAACATTGGCAAACCAAGTGCTGCGGACTGCAGAACAGGAAAGACGAAATTAG 3168 0.3908 MFVKKLVEKASIKKTGGNSSDGLKASDVDPRLVFHHGVPSGGAKFAYDTIQRILALSTKDGQIKLYGKDNAQAMLESSEPLPSKFLQFIQNQGVLINVTSNNHIEVWDIDKKLLSDVYMAKEEITSFAVIHHSLYMYIGHSNGNISVLKLDQEPSWHLVQMKYTIPLSASYGNSEVSDDTVVTHILPQPAAESKRVLIIFRNGQMILWNIRESRSIFKTGENMLQPLHTETKKVTSACWVCPFGSKAIVGYNNGELFIWSIRSLNIGNGSASEHSYQNTPLLKLNLGYKSDKISIGSIKWVYAGGKASRLYIMGASDCATSNLLQVVLLNEHTEARTIKLGLHLSECCIDMEIISTSTEQSKNKQDSFILLGKSGHLYLYDDILIERYLLQCQSKSTPSLPKEVTVKLPLAESSITTAKFISNNPNVLTFEDEYYRQLITSYPLFVPVETNQKDEISLSSAKFTGFSKVQNLYITGHSNGAINFWDASCPIFTPILQLKQQSENDCSLSGIPLTALYFDSNSPLLVSGDQSGMVCVFRFKTEPYATNSFMSLTGGTKKGTDHIIQSVKHVKINGAILSLNIDPSLMHLAVGSDQGHVSVFNIDGPTLLYQKHIASEISAGIISLQFLTSSLHGFEKNILAVGTKDSSVLALDKEAGNTLGTGTIHPKKPSKALFMQVLDGQGAPVNGSITKDGLESSERNHIEDATTKQQYILLCSEKALYVYSLVHAIQGVKKVLYKKRFHSSTCCWASTFYSPSDVGLILIFTSGKVELRSLPELSLIVETSIRGYNYSPPKLKSFSGCQICCSSKGDLVLVNGNQEFFVVSLLVQRNIFRLLDSISCIYRKKMMLSPEVFVPSPVIYKEKKKGIFSSVIKDFAGSKEKHAPILETEDTTESIQELSAIFSNENFPCDADNNDNLTVDEDELELNIDDIDLDDHEEKHKDQSILGALNKKKLTGKFQALKGRLKEMKGNIQKTSSKEEQQDEQAGAVDQIKKKYGFSSSNETSFAKLAESKLQENMKKLQGINLRTTEMQDKAKSFSTLANQVLRTAEQERRN* 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0942 1055 Gene3D - 45 301 IPR015943 GO:0005515
Gso16g0942 1055 CDD R-SNARE_STXBP5_6 991 1047 - -
Gso16g0942 1055 SUPERFAMILY WD40 repeat-like 572 818 IPR036322 GO:0005515
Gso16g0942 1055 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 1 1054 - -
Gso16g0942 1055 PANTHER LETHAL 2 GIANT LARVAE PROTEIN 1 1054 - -
Gso16g0942 1055 Coils Coil 951 985 - -
Gso16g0942 1055 Gene3D - 444 678 IPR015943 GO:0005515
Gso16g0942 1055 SUPERFAMILY WD40 repeat-like 85 648 IPR036322 GO:0005515
Gso16g0942 1055 SMART WD40_4 501 538 IPR001680 GO:0005515
Gso16g0942 1055 SMART WD40_4 560 601 IPR001680 GO:0005515
Gso16g0942 1055 SMART WD40_4 220 260 IPR001680 GO:0005515
Gso16g0942 1055 SMART WD40_4 451 486 IPR001680 GO:0005515
Gso16g0942 1055 SMART WD40_4 110 149 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0942 Gso-Chr16 25932183 25947816 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0942 - - gmx:100811900 2051.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0728 11 6494750 6505245 Gso16g0942 16 25932183 25947816 PCT
Gso16g0942 16 25932183 25947816 Gso11g0728 11 6494750 6505245 PCT