Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0645 ATGAAGGGTGGTGGTGGGAAGAGAAAGGCTTCTACCTCGGAGGCTCCGAACGATGTTGTTGTTGTTGTTGCTGCTGCTTCTGCTCCTTCTGATGATGCTGATTTGGGTGTTGGAGATGTCGGGGGTGTGAAAGTTCAAAACTTTGAGGGAAACGAGGGTACCCAGTTGCGGAATACTGAAGAACAGGAAGAAGAACCCCACCACGTGGAGGGTGATGAAGGAGGAGAAGACGAAGAAGATTATGCCGAGGGAGAGGAAGAATATGAAGAAGAAAATGGTGGTGCTGTTGCTGGGGGACAACAAGGTTTTCCTGCTCTTGGTGAAAATTTCTTTGAAGTTGAAGCCATACGTCGTAAGAGGTTGCGCAAGGGTGAGGTGCAATACTTAATCAAATGGAATGGGTGGCCCGAGACAGCCAACACTTGGGAGCCTCTGGAAAATCTAGAGTCTGTTCCTGATGTTGTTGAAGCTTTTGAGGAGAGCTTGAAGTCCGGAAAACATCGTAAGCGCAAACGCAAGCATGTAGTGCATCATACTCAACCCAAGAAGCGGCTGGAGCGTTCGACAACTCCTTACAGCCTTCGGCGTTTTTCAACTAGTACAGCTGAGAACCATACACAGTCTGCTCCTCCTCTTAATGATCCTAGCCTTCCAGATATTCCCGCCTTCCCTCACACTGTGCTGTTTTCTGATGATGTGGGAAATGGTGCTGAAGGCAGCAGTCTTAGAAAAGCCACACCCAGTAATGCTAACAGGTCTGCAAATGGTTCAGAACAAAATATTAAAAGGAATGAGGAAAATGATTATGATCCTGTGCTTAGTGAGCTTAAAGCTATGACTTCTAATGGGAATGATGCAGACAGGCTTGCAATACGGATTCCAGAAGCTAAGGGTTCTGGGCCTTCTGGCAGTAATGGTCAAATGGATGCTAAATCAAAGGGGGCTTGCATGGAAACAAGTGAAAGTGACCGCTGCCGGGGATCCAAAAGGAGAAAATGTGGTTCCGTAAAGAGGTTCAAGAAAGAACTATATGCTAATGAGCCTGCTAATGCGGAAAATCCAGTTAGCATGCCTGTTGGTACAGCTGAGCCAGAACGAACAAGAGATGCTGGTAGTGGTGGCAATACTAATCATGCCAGACCTGCTAGCAATATTGTAAACATTGTAAAGCCAGTAGGCTATTCAGCTTCAGTAGCCAGTGGAATGCAGGATGTTTTAGTAACCTTTGTGGCTTCAAAGTCTGATGGAACAGAAGTGATGGTTGACAACAAGTATCTAAAAGCATTTAATCCACTTCTTCTGATCAATTTCTATGAGCAGCATCTTCGCTACAGCCCTACATTGTGA 1347 0.4595 MKGGGGKRKASTSEAPNDVVVVVAAASAPSDDADLGVGDVGGVKVQNFEGNEGTQLRNTEEQEEEPHHVEGDEGGEDEEDYAEGEEEYEEENGGAVAGGQQGFPALGENFFEVEAIRRKRLRKGEVQYLIKWNGWPETANTWEPLENLESVPDVVEAFEESLKSGKHRKRKRKHVVHHTQPKKRLERSTTPYSLRRFSTSTAENHTQSAPPLNDPSLPDIPAFPHTVLFSDDVGNGAEGSSLRKATPSNANRSANGSEQNIKRNEENDYDPVLSELKAMTSNGNDADRLAIRIPEAKGSGPSGSNGQMDAKSKGACMETSESDRCRGSKRRKCGSVKRFKKELYANEPANAENPVSMPVGTAEPERTRDAGSGGNTNHARPASNIVNIVKPVGYSASVASGMQDVLVTFVASKSDGTEVMVDNKYLKAFNPLLLINFYEQHLRYSPTL* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0645 448 ProSiteProfiles Chromo and chromo shadow domain profile. 111 170 IPR000953 -
Gso16g0645 448 Pfam Chromo (CHRromatin Organisation MOdifier) domain 111 160 IPR023780 -
Gso16g0645 448 MobiDBLite consensus disorder prediction 347 379 - -
Gso16g0645 448 MobiDBLite consensus disorder prediction 191 213 - -
Gso16g0645 448 MobiDBLite consensus disorder prediction 70 92 - -
Gso16g0645 448 SMART chromo_7 110 163 IPR000953 -
Gso16g0645 448 SMART ChS_2 374 447 IPR008251 GO:0005634
Gso16g0645 448 PRINTS Chromodomain signature 108 116 IPR017984 -
Gso16g0645 448 PRINTS Chromodomain signature 121 135 IPR017984 -
Gso16g0645 448 PRINTS Chromodomain signature 136 148 IPR017984 -
Gso16g0645 448 ProSitePatterns Chromo domain signature. 128 148 IPR023779 -
Gso16g0645 448 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 1 447 - -
Gso16g0645 448 MobiDBLite consensus disorder prediction 28 101 - -
Gso16g0645 448 Gene3D - 105 175 - -
Gso16g0645 448 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 1 447 IPR044251 GO:0006325|GO:0031507
Gso16g0645 448 MobiDBLite consensus disorder prediction 241 258 - -
Gso16g0645 448 SUPERFAMILY Chromo domain-like 97 168 IPR016197 -
Gso16g0645 448 MobiDBLite consensus disorder prediction 162 267 - -
Gso16g0645 448 MobiDBLite consensus disorder prediction 295 315 - -
Gso16g0645 448 CDD CD_CSD 111 160 - -
Gso16g0645 448 MobiDBLite consensus disorder prediction 165 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0645 Gso-Chr16 8527986 8536546 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0645 - - gmx:100782342 777.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g0645 16 8527986 8536546 Gso3g0816 3 29633879 29642247 GST