Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0493 ATGTCTAAGGCCAAGCTCACTCGTTTCACAAGTGACCCTGTGAGGATTGCTGCTTTCTGCTTCAAGAACCTGAAGAAAACTCAGGTTCTTGATGCTGACATTTCTTCTGCTGTTGACAAGATTTTGCAAGAAATGGATGGTGTATCCTATAGAGTGCTGGGCTATCTTCTTCTTGGCACTATCAGAATATTCTCCCGAAAGGTTGAATATGTGCTTGAGGACTGCAACGAGGTTCTCCTCAAAATCAGCAAATTTGTCATCCACAAAGAAGGCTTAATACCTGTGGAAACCTTGCGTATGCCTATTACCATACCAGAAAGGTTTGAGTTGGATGCTTTTGAGTTGGATGGACTTGAAGATGCTGGCAGAGGCCATACTGCTCCTCCAGAAGAAATTACGCTTGGAGACAAAGAAATTGTGTGTAGCACTGAGGGATTTGGGTTGTTTTCTCACGAGAAGTTTGAGGAATTTGATGTCGGTGAAAATACCAGCTCTTTTGATCAAGATATAGTGGGAAATGCTTTACTATCTAAACTGTTGAATATGATGGACGATGAAGTTTCTCCACAAAATAGTCCTACTGATTTACTACCGGAAAGCTGGGATAAATTTCAAAGCAGCATATCAGGCTTTCAAGAAAATGTTTCAGATGAAGATGATGAAAGGCTTAGTGTTATTCCACCTAAGTCAAAAAATGTTGATGCAACTCCTCAGTCAAAGTTTCAAGGATATTCAGCTGGAAGACCACAACGAGATTCTGCTACAAAAGAGTCATTGCATGTTTCCACACCAGCTGCGAGGGATCATCCTCCCTTTTTAAGGAAAAGAAGAATTATTCTTGATAGAATGATTCTCCTGCCTAGCAAGGTAGTTAGAAAGAACATAGAGAGTGCAAAGGACTTGCTTCGTTTCCCTTTCCCGAGGGAATCACGTCGTACTTTACTTAATGCACGCTGTGTGAAGAAACACAGAGAATCTCCCACTTCCAGTCTTCCTGATAGATTCTATGAGCCTTTGCTTCCATGTTCTTCCTCTGAGCTTCAACTCCAATTCTCTAAAAGGAAAATGAAATTACCTAATTCCCTAAAGATTGTGGAAACTCCAGGGAATCCAGATGTGCCAGAATCTCCCACTGCTGGCCCTCTGCTAAGCCCTTCCCAATCTTCATTTTCCCTTGAAATTGAGGAAACTCCAAGAATGTTAGATGTACCTCAATCTCAGGATTCTAGCATTCAAATGAATGAAGTGCCTAATTTGATTGATGAGGAAATAAATTCATGTGCAACAAATGAATCAGAATCATTAGCTGGGTGGTCTGGTCGAACCGGGAAAGTTGCAAGTTGCTTGCATCAGAGTTTTCTACATGCAAGAAAAGAAAGAGAGGACACCATAAACTTTTCACAAGTCTTTGGAGGCCAAGCACGGAAAGAATCTGCCCTGTTGTTTTATGAAGTACTGGTTTTGAAAACTTCAGGATACGTGGATGTGAAGCAACAAGAAGCTTATGGTGATATTGCAATCTGTAGACTCCCGAAATTAGATCAGATTTTTTTATGTGATGGTGGTCTATTAGAATGA 1578 0.4087 MSKAKLTRFTSDPVRIAAFCFKNLKKTQVLDADISSAVDKILQEMDGVSYRVLGYLLLGTIRIFSRKVEYVLEDCNEVLLKISKFVIHKEGLIPVETLRMPITIPERFELDAFELDGLEDAGRGHTAPPEEITLGDKEIVCSTEGFGLFSHEKFEEFDVGENTSSFDQDIVGNALLSKLLNMMDDEVSPQNSPTDLLPESWDKFQSSISGFQENVSDEDDERLSVIPPKSKNVDATPQSKFQGYSAGRPQRDSATKESLHVSTPAARDHPPFLRKRRIILDRMILLPSKVVRKNIESAKDLLRFPFPRESRRTLLNARCVKKHRESPTSSLPDRFYEPLLPCSSSELQLQFSKRKMKLPNSLKIVETPGNPDVPESPTAGPLLSPSQSSFSLEIEETPRMLDVPQSQDSSIQMNEVPNLIDEEINSCATNESESLAGWSGRTGKVASCLHQSFLHARKEREDTINFSQVFGGQARKESALLFYEVLVLKTSGYVDVKQQEAYGDIAICRLPKLDQIFLCDGGLLE* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0493 525 Pfam N terminus of Rad21 / Rec8 like protein 17 87 IPR006910 GO:0005515
Gso16g0493 525 MobiDBLite consensus disorder prediction 212 267 - -
Gso16g0493 525 SUPERFAMILY "Winged helix" DNA-binding domain 451 513 IPR036390 -
Gso16g0493 525 PANTHER SISTER CHROMATID COHESION 1 PROTEIN 2 228 518 - -
Gso16g0493 525 PANTHER SISTER CHROMATID COHESION 1 PROTEIN 2 16 213 - -
Gso16g0493 525 MobiDBLite consensus disorder prediction 231 260 - -
Gso16g0493 525 Pfam Conserved region of Rad21 / Rec8 like protein 464 512 IPR006909 -
Gso16g0493 525 PANTHER SCC1 / RAD21 FAMILY MEMBER 228 518 IPR039781 GO:0007062|GO:0008278
Gso16g0493 525 PANTHER SCC1 / RAD21 FAMILY MEMBER 16 213 IPR039781 GO:0007062|GO:0008278
Gso16g0493 525 Gene3D Structural maintenance of chromosome 1. Chain E 441 518 IPR023093 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0493 Gso-Chr16 5810196 5818340 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0493 K06670 - gmx:100775734 1036.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0758 19 31014130 31024505 Gso16g0493 16 5810196 5818340 GST