Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0342 ATGGCAATTGCACGCACTGGAGTCTACGTCGACGACTATTTGGAGTACGCGAGCACATTACCCGCTGAACTTCAGAGGCTGCTCAACACTGTTCGGGAACTCGATGATCGATCCCAATCTATGATAACCCAGACCAGGCAGCAGACGAAGTACTGTATGGGGTTCTCATCACATGGCTCTAAGAAGGGTAATCATCACAGTTATAATAACAATTATGGGAATGAGGACGACAATGCCGCTATTGAGAAAATGCGAAAAGAAATCGAGGCAAATCAGGATAGTGCATTGAGTCTTTGTACTGAGAAGGTTTTGCTGGCGCGACAAGCATATGACCTGATAGATAGTCATATAAAACGACTTGATGAGGATTTAAACAACTTTGCCGAAGATTTAAAGCAAGAGGGTAAAATAGCACCAGATGAACCAGCAATTCTGCCCCCGTTGCCTATAGTCCCTAAACCTGAAAAGCGTAAACCCATATATGTAACTCCTCAATCAAAGAGAATTGATTACAGGGATAGAGATTGGGATAGGGAGCGTGATAGGGACTTTGAGCTGATGCCTCCACCAGGAAGTCATAAAAAGGAGTATGCTACCCCGATGGATGTTGATCAACCCATTGATCCAAATGAACCGACATACTGTGTTTGTCATCAGGTATCTTTTGGAGATATGATTGCTTGTGACAATGAAAATTGCCAAGGAGGTGAATGGTTCCACTATTCGTGCGTTGGGCTAACGCAAGAGACAAGGTTCAAGGGAAAGTGGTACTGTCCGACTTGCATATTACTCCCACAATGTCAACGATGA 810 0.4407 MAIARTGVYVDDYLEYASTLPAELQRLLNTVRELDDRSQSMITQTRQQTKYCMGFSSHGSKKGNHHSYNNNYGNEDDNAAIEKMRKEIEANQDSALSLCTEKVLLARQAYDLIDSHIKRLDEDLNNFAEDLKQEGKIAPDEPAILPPLPIVPKPEKRKPIYVTPQSKRIDYRDRDWDRERDRDFELMPPPGSHKKEYATPMDVDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYSCVGLTQETRFKGKWYCPTCILLPQCQR* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0342 269 SUPERFAMILY FYVE/PHD zinc finger 189 262 IPR011011 -
Gso16g0342 269 SMART ING_2 9 127 IPR024610 -
Gso16g0342 269 CDD ING_plant 17 124 - -
Gso16g0342 269 ProSiteProfiles Zinc finger PHD-type profile. 212 264 IPR019787 -
Gso16g0342 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 263 IPR013083 -
Gso16g0342 269 SMART PHD_3 214 262 IPR001965 -
Gso16g0342 269 PANTHER INHIBITOR OF GROWTH PROTEIN 2 264 IPR028651 -
Gso16g0342 269 CDD PHD_ING 214 261 - -
Gso16g0342 269 Gene3D - 5 125 - -
Gso16g0342 269 PANTHER PHD FINGER PROTEIN ING2 2 264 - -
Gso16g0342 269 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 127 IPR024610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0342 Gso-Chr16 3869245 3873513 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0342 K11346 - gmx:100787916 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0939 19 36420931 36424687 Gso16g0342 16 3869245 3873513 GST