Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0317 ATGCAGGTAACTGAGACGAGGACTGTTCAAGTTAAGCAGCTTTCAGATCTAGCTGGTGTAAGAGAGATTCACGAGTTCTTCTCCTTTTCTGGAGAAATCGAGCATGTTGAGATCCTGAGTGAAGATGGGAAATCAAAGACTGCATATGTGACATTTAAAGATCCCAAAGCACTTGAAATTGCATTATTATTATCGGGAGCAACAATAGTAGACCAGGTTGTGAAGATAACTCCAGCTGAGAACTATGTACCAAATCGTGAGATGCAGGAAGTAAGAGTGGTGGAAAATGCTATAAATGTTGTTCCTTCTGAGAATTCTGAGAACGTCTCCTCAAATATTGAGGAGGGGATAGCCAGCCCCACCAATAGAAGAATCTACCTTAGTAGAGCACAAGATGCAGTTACAAATATGCTGGCGAAAGGTTCAGCAATAAGACAAGATGCAGTGAACAAAGCTAAAGCATTTGATGAAAAGCATCAATTGACTGCCAATGCATCTGCAAAGGTCATTTCTTTTGACAAGAGAGTTGGACTGACGGAGAAATTGACAGTAGGCATCGCTGCAATGAACCAGAAAGTCAAGTCTGTGGATCAGAGGCTTCAGGTGTCAGATAAAACAATGGCAGCAATAATTGCAGCTGAGAGGAAGATAAATGACACTGGATCAGCTGTCAAAACAAGCAGATATGTGACTGCTGGAACAGCATGGTTCAATGGTGCTTTTAGCAAGGTGGCAAAGGCTGGACATGTTGCAAGTTCTAAAACTAGAGAAAAATTTCATTTGGCTGTTTCAAACTTGACATCAAAGGAACCGTCAGTGGCTGCTGCATAG 831 0.4188 MQVTETRTVQVKQLSDLAGVREIHEFFSFSGEIEHVEILSEDGKSKTAYVTFKDPKALEIALLLSGATIVDQVVKITPAENYVPNREMQEVRVVENAINVVPSENSENVSSNIEEGIASPTNRRIYLSRAQDAVTNMLAKGSAIRQDAVNKAKAFDEKHQLTANASAKVISFDKRVGLTEKLTVGIAAMNQKVKSVDQRLQVSDKTMAAIIAAERKINDTGSAVKTSRYVTAGTAWFNGAFSKVAKAGHVASSKTREKFHLAVSNLTSKEPSVAAA* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0317 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 72 IPR000504 GO:0003723
Gso16g0317 276 SMART rrm1_1 8 77 IPR000504 GO:0003723
Gso16g0317 276 Gene3D - 1 92 IPR012677 -
Gso16g0317 276 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 4 275 - -
Gso16g0317 276 SUPERFAMILY RNA-binding domain, RBD 4 87 IPR035979 GO:0003676
Gso16g0317 276 PANTHER RNA BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 4 275 - -
Gso16g0317 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0317 Gso-Chr16 3600224 3604258 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0317 - - gmx:100812446 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0965 19 36849905 36853874 Gso16g0317 16 3600224 3604258 GST