Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0135 ATGGTTGTGGCTGGGGGTGCTAAGTTCAATTTGAGAAGAGGCAATGGTTCTTCTCATAATGTTGTCAATGGCTATAGCAGTGATGGAGATCTTTGCAGAATTAGCAAAAGTGGGTGTTTTTCGTCGGTGGCTGAGGTGGATAGAGATCCTTCTTGCGTTTCATTCACCACTTTCAACATTCTGGCTCCGATTTACAAACGGATTGACCCACAGAACCAGGGCCTGCGAGAAAGTGACTTCAGAGCATTCTGGTTGGCCAGGAATGAGAGGATTCTTGATTGCTTGCTTTCTGAATCATCTTCCATTATGTGCCTTCAGGAGTTTTGGGTTGGAAATGAAGAACTTGTTAACATGTATGAGGAGAGACTTGGGGATGCTGGCTACAATCTCTTCAAGCTCGCGCGAACCAACAATCGCGGAGATGGTCTGCTGATTGCTATACGTAAAGAATGTCTAAGAGTTATGGATTATAAAGAGTTGCTTTTAAACGATTGTGGCGATCGCGTTGCTCAGTTGTTACATGTTCAGTCAGCTACCCCCTTTGTACAAAACCCAAAAGGCAGTGTTCCTCAAGAGTTTCTGATTGTGAACACCCACCTGTTATTTCCTCATGATTCAAGTCTTTGTGTAGTGAGATTGAATCAGGTTTACCAAATATTGCAATATGTGGAATTGTATCAGAGAGAAAACAGGCTCAAACCCATGCCTATTATACTCTGTGGTGACTGGAATGGAAGCAAGCGTGGGCATGTTTACAAGTTCCTAAGGTCACAGGGGTTTGTATCATCATATGACATTGCTAATCAATACAGTGACAGTTATGCAGATTCTCACAAGTGGGTTAGTCACCGAAATCATAGGGGAAATATCTGTGGTGTTGACTTCATTTGGCTTTGCAATCCCAACCAAGCACGTAAACCTTTAAAGACAAGTTGGGCTGAAGCTGTATTTAGTATACTAAAATTCCAGTTACGAAAAGCATCGTTATCTGAAGATGATGCATTTGCCTTTCTGAAGGGTGACAACTATGCTGATTCTGTGACATATTTTAGCTTCTCCGAAGCACTTCGGCAGGTGAAGTTAATTGGTGTGCCTTATGGACTACGTTTTCAACAGTTGCAAGATCTATGGAATCAAGCAGATGCTGATGGAAATGGTGTCATAGACTTTGAAGAATTCAAGCAGAAAATATGGAATTCTACATGTCCAGAGCATGTGTTGGAAAATCTGAATGGTTGCACGGAAGATTGTAACACAGAACAGGAGCAAGAAGCTATTGGTTTTAAGGTGAAGAATGCAATGCTGTATCCGCGTGAAGTGGAGAAAGGACTATGGCCAGAAGATTATTCTCTTTCTGATCATGCTAGACTCACAGCTGTGTTTTCACCAGCAAGGATGAGATGTTCTGCCTCACAAAACTGA 1422 0.4219 MVVAGGAKFNLRRGNGSSHNVVNGYSSDGDLCRISKSGCFSSVAEVDRDPSCVSFTTFNILAPIYKRIDPQNQGLRESDFRAFWLARNERILDCLLSESSSIMCLQEFWVGNEELVNMYEERLGDAGYNLFKLARTNNRGDGLLIAIRKECLRVMDYKELLLNDCGDRVAQLLHVQSATPFVQNPKGSVPQEFLIVNTHLLFPHDSSLCVVRLNQVYQILQYVELYQRENRLKPMPIILCGDWNGSKRGHVYKFLRSQGFVSSYDIANQYSDSYADSHKWVSHRNHRGNICGVDFIWLCNPNQARKPLKTSWAEAVFSILKFQLRKASLSEDDAFAFLKGDNYADSVTYFSFSEALRQVKLIGVPYGLRFQQLQDLWNQADADGNGVIDFEEFKQKIWNSTCPEHVLENLNGCTEDCNTEQEQEAIGFKVKNAMLYPREVEKGLWPEDYSLSDHARLTAVFSPARMRCSASQN* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0135 473 SUPERFAMILY EF-hand 350 398 IPR011992 -
Gso16g0135 473 ProSitePatterns EF-hand calcium-binding domain. 381 393 IPR018247 -
Gso16g0135 473 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 27 469 - -
Gso16g0135 473 SUPERFAMILY DNase I-like 48 287 IPR036691 -
Gso16g0135 473 Pfam Endonuclease/Exonuclease/phosphatase family 84 268 IPR005135 GO:0003824
Gso16g0135 473 Gene3D Endonuclease/exonuclease/phosphatase 40 467 IPR036691 -
Gso16g0135 473 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 27 469 - -
Gso16g0135 473 ProSiteProfiles EF-hand calcium-binding domain profile. 368 403 IPR002048 GO:0005509
Gso16g0135 473 SMART efh_1 372 400 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0135 Gso-Chr16 1425645 1429894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0135 118 469 EF-hand Containing Proteins AT1G02270 62.953 3.77e-168 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0135 - - gmx:100788191 975.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0426 7 4002783 4006957 Gso16g0135 16 1425645 1429894 GST