Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0065 ATGGCCCTTACAAAACAAATAATGGGTTCTTCATTGCTAGAGAGGTCCATGTTTGTTCCTTCTTCTTCTTCCCCTTCATCATTTTTTAACTCAACTCGGTTCTTAGTTCCTTTGGAGAACAAGAGAGTTGTGAGGATGAAGAGAGCTGCAAAGTTTCCTGTGGCAGCTATAAGTGAGGATTTGATGAAGGGTTCTTCTTCTTCTCCTTCATCATCTTCATCCTCTTCTTCTGTGTCTACAGAAAAACCAGTGAAATTCAAAGTTAGAGCTGTGATCACAGTGAGGAACAAGATCAAAGAGGATTTCAAAGAGACCATTGTGAAGCATATTGATGCTCTTACTGACAGGATTGGAAGGAATGTTGTCCTTGAACTTGTTAGCACTGAGATTGATCCAAAGACCAAATCTGCAAAGAAGAGTAATGAAGCAGTGTTGAAGGATTGGTCAAAGAAGTCCAATCTTAAGGCAGAGAGAGTTAATTACACGGCTGAATTCATAGTTGACTCTAGTTTTGGGGAGCCAGGAGCTATTACTGTGACAAACAAACACCAGAAAGAGTTCTTCTTGGAAAGCATAACAATTGAAGGATTTGCTAGTGGACCGGTTCATTTCCCCTGCAATTCATGGGTACAATCAAGAAAAGATCTTCCTGGAAAGAGGATTTTCTTTTCCAATAAGCCTTATTTACCCGGGGATACACCTGCTGGACTTAGATTATTGAGGGAGAAAGAGCTGAGAAATCTTAGAGGTGATGGCAAAGGAGTTAGAAACTTATCTGACAGAATATATGACTATGATATATACAATGATTTGGGGAATCCAGATAAAGGAATTGAACTTGCCAGACCAAATCTTGGAGGATCAGATATGTATCCATACCCAAGACGGTGTCGTACTGGCCGCGAACCAAGTGATACAGATATGTACGCAGAGAGTCGTGTGGAGAAGCCACTGCCTATGTATGTGCCAAGAGATGAACGTTTTGAGGAGTCTAAGCAGAACACATTCACTGTGAAGAGGCTCAAGGCAGTGCTGCATAACTTGATCCCAGGTCTTAAGGCTAGCCTTTCTTCTAGCAACCAAGACTTCAATGAATTCTCAGATGTCGATGGCCTTTACAGTGAAGGGTTGCTCATAAAGTTGGGGTGGGGCTTGCAAGATGACGTGTTGAAGAAAATCCCATTTGTCAGCAAGATCCAAGAGTCCAGCCAGGGACTTCTTAAGTATGACACCCCTAAGATTATTTCCAAGGACAAATTTGCTTGGCTGCGAGATGATGAATTTGCCCGTCAAGCAATAGCAGGAGTTAACCCTGTTAACATTGAGAGGCTTCAAGTTTTCCCACCAGTTAGCAAACTAGACCCAGAAATTTATGGCCCCCAAGAGTCTGCTCTTAAAGAAGAAAATATTTTGAACCAACTCAATGGCATGACCGTTCAAGAGGCAATAAACGAAAACAAGCTGTTTATGATTGATTATCATGATATATATCTACCTTTCTTAGAAGGGATCAATGCCCTTGATGGTAGGAAATCATATGCCACACGCACCATCTTTTTCTTGACTCCACGTAGCACTCTCAAGCCTGTGGCTATAGAACTTAGCCTCCCTCACGCTGGACCTAATTCCCGATCAAAGCGCGTGGTTACACCTCCTGTTGATGCTACTACTAATTGGATGTGGCAGCTTGCCAAGGCCCATGTTTGCTCCAATGATGCTGGGGTGCACCAACTTGTTAACCATTGGCTACGCACACATGCCAACTTGGAACCATTTATATTGGCGGCTCATAGGCAATTAAGTGCTATGCATCCAATTTTCAAGTTGTTGGACCCCCACATGAGGTACACCTTGGAGATCAATACCTTGGCTAGACAGAGTTTGATCCATGCTGATGGAATCATTGAAAATTGCTTCACTCCTGGTCGCTATGCCATGGAGATTAGTTCTGCTGCTTACAAGAACTTTTGGCGCTTTGACATGGATAGCCTCCCTGCAGATCTTATCCGCAGGGGAATGGCAGTAGCTGACCCAACACAACCACATGGCCTAAAACTCATATTGGAAGACTACCCTTATGCAGCTGATGGAATACTAATATGGTCTGCAATAGAAGACTGGGTTCGAACCTATGTGAACCATTACTACCCTCACTCAAGCCTTATATGCAATGACAAAGAGCTACAATCTTGGTACTCTGAGTCAATCAATGTAGGCCATGCTGATCTTAGGCACGAAAATTGGTGGCCAACATTGAACAATAGTGAGGATCTTGTGTCCATTCTTTCCACATTGATTTGGAATGCATCTGCACAACATGCTGCTCTCAACTTTGGTCAGTACCCTTATGGTGGCTATGTGCCTAATCGTCCACCACTGATGAGAAGGCTAATACCAGAAGAGGGTGATCCAGAATATGCAAGTTTCATTGCTGACCCTCAGAAGTATTTCCTGAATGCATTGCCAAGCTTGCTTCAGGCCACAAAGTTCATGGCTGTGGTTGACACACTCTCCACTCACTCACCTGATGAGGAGTACTTGGGTGAGAGGCAACAACCTTCCATTTGGTCTGGCGACGCTGAGATTGTAGAGGCGTTCTACGATTTCTCCGCCAAGGTTCAACAGATAGAGAAGGTGATTGATGGCAGGAACCTTGATAGGACTCTAAGGAACCGTTGCGGTGCAGGGGTGTTGCCTTATGAGTTGCTTGCTCCTAGCTCTGAACCTGGTGTTACATGCAGAGGGGTGCCTAATAGTGTGTCCACATAA 2769 0.4391 MALTKQIMGSSLLERSMFVPSSSSPSSFFNSTRFLVPLENKRVVRMKRAAKFPVAAISEDLMKGSSSSPSSSSSSSSVSTEKPVKFKVRAVITVRNKIKEDFKETIVKHIDALTDRIGRNVVLELVSTEIDPKTKSAKKSNEAVLKDWSKKSNLKAERVNYTAEFIVDSSFGEPGAITVTNKHQKEFFLESITIEGFASGPVHFPCNSWVQSRKDLPGKRIFFSNKPYLPGDTPAGLRLLREKELRNLRGDGKGVRNLSDRIYDYDIYNDLGNPDKGIELARPNLGGSDMYPYPRRCRTGREPSDTDMYAESRVEKPLPMYVPRDERFEESKQNTFTVKRLKAVLHNLIPGLKASLSSSNQDFNEFSDVDGLYSEGLLIKLGWGLQDDVLKKIPFVSKIQESSQGLLKYDTPKIISKDKFAWLRDDEFARQAIAGVNPVNIERLQVFPPVSKLDPEIYGPQESALKEENILNQLNGMTVQEAINENKLFMIDYHDIYLPFLEGINALDGRKSYATRTIFFLTPRSTLKPVAIELSLPHAGPNSRSKRVVTPPVDATTNWMWQLAKAHVCSNDAGVHQLVNHWLRTHANLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINTLARQSLIHADGIIENCFTPGRYAMEISSAAYKNFWRFDMDSLPADLIRRGMAVADPTQPHGLKLILEDYPYAADGILIWSAIEDWVRTYVNHYYPHSSLICNDKELQSWYSESINVGHADLRHENWWPTLNNSEDLVSILSTLIWNASAQHAALNFGQYPYGGYVPNRPPLMRRLIPEEGDPEYASFIADPQKYFLNALPSLLQATKFMAVVDTLSTHSPDEEYLGERQQPSIWSGDAEIVEAFYDFSAKVQQIEKVIDGRNLDRTLRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVST* 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0065 922 Gene3D - 229 331 - -
Gso16g0065 922 PRINTS Plant lipoxygenase signature 194 212 IPR001246 GO:0016491
Gso16g0065 922 PRINTS Plant lipoxygenase signature 220 241 IPR001246 GO:0016491
Gso16g0065 922 PRINTS Plant lipoxygenase signature 259 275 IPR001246 GO:0016491
Gso16g0065 922 PRINTS Plant lipoxygenase signature 292 311 IPR001246 GO:0016491
Gso16g0065 922 PRINTS Plant lipoxygenase signature 360 381 IPR001246 GO:0016491
Gso16g0065 922 PRINTS Plant lipoxygenase signature 407 423 IPR001246 GO:0016491
Gso16g0065 922 PRINTS Plant lipoxygenase signature 446 465 IPR001246 GO:0016491
Gso16g0065 922 PRINTS Plant lipoxygenase signature 513 537 IPR001246 GO:0016491
Gso16g0065 922 PRINTS Plant lipoxygenase signature 834 848 IPR001246 GO:0016491
Gso16g0065 922 CDD PLAT_LH2 86 225 IPR042057 -
Gso16g0065 922 PANTHER LIPOXYGENASE 30 921 IPR000907 GO:0016702|GO:0046872
Gso16g0065 922 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 227 922 IPR013819 GO:0016702|GO:0046872
Gso16g0065 922 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 86 228 IPR036392 GO:0005515
Gso16g0065 922 SUPERFAMILY Lipoxigenase 230 921 IPR036226 -
Gso16g0065 922 PRINTS Lipoxygenase signature 558 575 IPR013819 GO:0016702|GO:0046872
Gso16g0065 922 PRINTS Lipoxygenase signature 576 593 IPR013819 GO:0016702|GO:0046872
Gso16g0065 922 PRINTS Lipoxygenase signature 596 616 IPR013819 GO:0016702|GO:0046872
Gso16g0065 922 PANTHER LIPOXYGENASE 3, CHLOROPLASTIC 30 921 - -
Gso16g0065 922 ProSitePatterns Lipoxygenases iron-binding region signature 2. 603 613 IPR020834 GO:0016702|GO:0046872
Gso16g0065 922 Gene3D - 420 553 - -
Gso16g0065 922 Pfam PLAT/LH2 domain 137 223 IPR001024 GO:0005515
Gso16g0065 922 Gene3D - 555 921 - -
Gso16g0065 922 Gene3D PLAT/LH2 domain 73 228 - -
Gso16g0065 922 Gene3D - 332 419 IPR027433 -
Gso16g0065 922 Pfam Lipoxygenase 237 905 IPR013819 GO:0016702|GO:0046872
Gso16g0065 922 ProSiteProfiles PLAT domain profile. 102 224 IPR001024 GO:0005515
Gso16g0065 922 SMART LH2_4 86 225 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0065 Gso-Chr16 748243 755172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0065 1 921 Acyl Lipid Metabolism Gene Families AT1G17420 72.354 0.0 1390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0065 K00454 - gmx:100791000 1831.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0351 7 3304618 3311096 Gso16g0065 16 748243 755172 GST