Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1577 ATGAACTTCCGGTTCCAGAACCTGTTGGGCGCCCCCTACAGAGGGGGAAACGTGGTCATTTCCAGCAACACCGTGCTACTCTCCCCCGTCGGTAACCGCGTTGCCGTCACGGACCTCCTCAAGTCCGAGACCACCACGCTCCCCATCCAGTCCTCCTCCAACGTCACCCGCATCGCCGTCTCCGCCGACGCCACCTTCCTCCTCGCCGTCGACGACCGCAACCGCTGCCTCTTCATCAACCTCCGCCGCCGCGCCCTCCTCCATCGCATCACCTTCAAGCACCGCGTCACCGCAGCGAAGTTCAGCCCCGAAGGCTCCCTCATCGCCGTCGCTGCCGGGAAGCTGGTCCAGATCTGGCGCTCGCCGGCGTTCCGGCGGGAGTATTTCCCCTTCGAGCTCGTTCGGACCTTTGCGGACTTCGACGCGAAGGTCACCTCCCTCGATTGGAGCCCCGACTCGAAATACCTCGTCGCCGGGTCCAAGGATTTGACCGCGAGAATCTTGTGCTTGAAGAAATTGAACACTGGTGGTGTTAAAAAAAGGCCTTTTTTGCTCCTAGGGCATAGGGATTCTGTTGCCGGTTCGTTCTTCGGTGTCAATTCGAAGACTAATAGGGTTTGCAAGGCTTATACGGTTACTAGGGATTGTTATTTGTTTAGCTGGGGTTTTACTTCTGATGATGATAGTGGTGAGGGTTCGGAGCCGCCCTCTCCGGGGACGCCGGAGAGGGACGTGGAAGAGAATTTGGAGGATAGTGAGAATGATGGTGTGGAGAAAAGAAAGAAAATTAGTGAGAATGGTGGTGTGAAGAAAAGAAAGAAAACTGATATTGAGGATGGTGATGAAGGTTACTTGAGTAGAGGGAAGTGGGAGTTATTGAGGAAGGATGGGTTTATGCAGGGATCGGCAAAGGTGACCGCGTGTGATTATCATAGAGGGCTGGATATGGTGGTTGTTGGATTTTCTAATGGTGTGTTTGGATTGTATCAGATGCCGGATTTTGTGTGCATTCATTTGTTGTCTATTTCAAGGGAGAAGATTACCACTGCAGTGTTTAATGAGCTTGGGAATTGGTTGACCTTTGGCTGTGCCAAGTTGGGACAGCTGCTTGTGTGGGAGTGGAGGTCTGAGAGCTACATTTTGAAGCAGCAGGGTCACTACTTTGATGTGAACTGCGTTGCATATTCGCCAGACTCGCAGCTCCTTGCAACCGGAGCAGATGATAATAAAGTGAAGGTGTGGACTCTTTCCTCAGGCTTTTGCTTTGTTACATTTTCTGAGCACACTAATGCTATTACGGCTCTACATTTTATACCAAGTAACAATGTCCTGCTTAGTGCATCTCTTGATGGGACCATTCGTGCATGGGACTTATTACGTTACCGGAATTTTAAGACGTTTACAACCCCTTCTCCGAGGCAGTTTGTTTCTTTGACAGCTGATATAAGTGGTGAAGTGATATGTGCTGGCACTTCAGATTCCTTTGAGGTTTTTGTTTGGTCAATGAAAACGGGGCGCTTGATGGATGTGCTTAGTGGTCATGAAGCTCCTGTTCATGGACTGGTGTTTTCTCCTACAAATACTGTCTTGGCTTCATCATCATATGACAAAACTGTTCGGCTGTGGAATGTCTTTGATGGAAAAGGAGCAGTTGAAACGTTTCCTCACACACACGATGTTCTTACAGTTGTTTACCGTCCAGATGGAAGGCAGTTAGCTTGCAGCACATTAGATGGGCAAATTCATTTTTGGGACCCAATAGATGGTTTGCTAATGTACACCATAGAAGGTTCTAGAGATATAGCCGGTGGGCGTCTTATGACAGACCGTAGATCAGCTGCTAACTCAACTTCAGGGAAGTTCTTTACAACCTTGTGTTATTCAGCTGATGGAAGCTATATATTAGCTGGGGGAAGTAGCAGATACATCTGCATGTATGATGTTACAGATCAGGTTTTGCTTCGACGTTTCCAGATAACTCACAATCTCTCATTAGATGGAGTGCTTGACATTTTTAACTCGAAGAATATGACTGAAGCTGGCCCACTAGATTTGATTGATGATGACAACAGTGACATTGAAGAAGGTGTTGACAAACAAACACGAGGGAAGCTAGGATTAGACTTGCCAGGATCTATGCCTAACCGTGGAAGGCCTATTATTCAGACAAAGAGCCTGAGAATTGCACCTACGGGACGTAATTTTGTTGCAGCAACAACTGAGGGAGTTTTGGTTTATTCTGTTGATGAATCATTCATATTTGATCCAACTGACCTAGACATAAATGTTACACCTGAGGCTGTTGAAGAGGCTCTGCGGGAAAATCAACCAAGTAAAGCCTTGATCCTTAGCCTTCGCCTGAATGAGGATTCTTTCATTAAAAAATGTATATTTGCGGTTAGTCCAGGAGATATTCCAGCAGTTGCCACATCAATGCCTTACAAATATATCCAGCGATTAGTTGAGGCACTTGCAGATCTTTTAGAAAACTGCCCACATTTGGAATTTACACTTAGATGGTCTCAGGAGCTCTGCAAAGCCCATGGGAGTTCTATTCAGCAGAACTCTAGAAATCTGTTACCATCATTGAAATCTTTGCAGAAAGCAATCACTAGAATTCATCAAGATCTAGCAGATACATGTTCCTCCAATGAATATATGCTGCGATATTTATGTTCTTCTGGTGCCAAGAAATGA 2697 0.4679 MNFRFQNLLGAPYRGGNVVISSNTVLLSPVGNRVAVTDLLKSETTTLPIQSSSNVTRIAVSADATFLLAVDDRNRCLFINLRRRALLHRITFKHRVTAAKFSPEGSLIAVAAGKLVQIWRSPAFRREYFPFELVRTFADFDAKVTSLDWSPDSKYLVAGSKDLTARILCLKKLNTGGVKKRPFLLLGHRDSVAGSFFGVNSKTNRVCKAYTVTRDCYLFSWGFTSDDDSGEGSEPPSPGTPERDVEENLEDSENDGVEKRKKISENGGVKKRKKTDIEDGDEGYLSRGKWELLRKDGFMQGSAKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLTFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCVAYSPDSQLLATGADDNKVKVWTLSSGFCFVTFSEHTNAITALHFIPSNNVLLSASLDGTIRAWDLLRYRNFKTFTTPSPRQFVSLTADISGEVICAGTSDSFEVFVWSMKTGRLMDVLSGHEAPVHGLVFSPTNTVLASSSYDKTVRLWNVFDGKGAVETFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPIDGLLMYTIEGSRDIAGGRLMTDRRSAANSTSGKFFTTLCYSADGSYILAGGSSRYICMYDVTDQVLLRRFQITHNLSLDGVLDIFNSKNMTEAGPLDLIDDDNSDIEEGVDKQTRGKLGLDLPGSMPNRGRPIIQTKSLRIAPTGRNFVAATTEGVLVYSVDESFIFDPTDLDINVTPEAVEEALRENQPSKALILSLRLNEDSFIKKCIFAVSPGDIPAVATSMPYKYIQRLVEALADLLENCPHLEFTLRWSQELCKAHGSSIQQNSRNLLPSLKSLQKAITRIHQDLADTCSSNEYMLRYLCSSGAKK* 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1577 898 PANTHER WD40 REPEAT PROTEIN 1 895 IPR027145 -
Gso15g1577 898 Gene3D - 262 469 IPR015943 GO:0005515
Gso15g1577 898 ProSitePatterns Trp-Asp (WD) repeats signature. 530 544 IPR019775 -
Gso15g1577 898 SMART WD40_4 130 169 IPR001680 GO:0005515
Gso15g1577 898 SMART WD40_4 608 647 IPR001680 GO:0005515
Gso15g1577 898 SMART WD40_4 333 373 IPR001680 GO:0005515
Gso15g1577 898 SMART WD40_4 504 543 IPR001680 GO:0005515
Gso15g1577 898 SMART WD40_4 418 457 IPR001680 GO:0005515
Gso15g1577 898 SMART WD40_4 83 120 IPR001680 GO:0005515
Gso15g1577 898 SMART WD40_4 45 80 IPR001680 GO:0005515
Gso15g1577 898 SMART WD40_4 376 415 IPR001680 GO:0005515
Gso15g1577 898 SMART WD40_4 547 585 IPR001680 GO:0005515
Gso15g1577 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 553 585 IPR001680 GO:0005515
Gso15g1577 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 553 585 - -
Gso15g1577 898 CDD WD40 336 639 - -
Gso15g1577 898 SUPERFAMILY WD40 repeat-like 127 591 IPR036322 GO:0005515
Gso15g1577 898 SUPERFAMILY Calcium-dependent phosphotriesterase 555 749 - -
Gso15g1577 898 PRINTS G protein beta WD-40 repeat signature 402 416 IPR020472 -
Gso15g1577 898 PRINTS G protein beta WD-40 repeat signature 444 458 IPR020472 -
Gso15g1577 898 PRINTS G protein beta WD-40 repeat signature 530 544 IPR020472 -
Gso15g1577 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 383 424 IPR001680 GO:0005515
Gso15g1577 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 511 552 IPR001680 GO:0005515
Gso15g1577 898 ProSitePatterns Trp-Asp (WD) repeats signature. 444 458 IPR019775 -
Gso15g1577 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 383 419 - -
Gso15g1577 898 SUPERFAMILY DPP6 N-terminal domain-like 10 220 - -
Gso15g1577 898 MobiDBLite consensus disorder prediction 253 275 - -
Gso15g1577 898 Pfam WD domain, G-beta repeat 134 167 IPR001680 GO:0005515
Gso15g1577 898 Pfam WD domain, G-beta repeat 421 457 IPR001680 GO:0005515
Gso15g1577 898 Pfam WD domain, G-beta repeat 557 585 IPR001680 GO:0005515
Gso15g1577 898 Pfam WD domain, G-beta repeat 506 543 IPR001680 GO:0005515
Gso15g1577 898 Pfam WD domain, G-beta repeat 384 414 IPR001680 GO:0005515
Gso15g1577 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 511 544 - -
Gso15g1577 898 Gene3D - 483 684 IPR015943 GO:0005515
Gso15g1577 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 425 458 - -
Gso15g1577 898 MobiDBLite consensus disorder prediction 226 275 - -
Gso15g1577 898 Pfam Dip2/Utp12 Family 788 893 IPR007148 -
Gso15g1577 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 425 466 IPR001680 GO:0005515
Gso15g1577 898 Gene3D - 21 227 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1577 Gso-Chr15 21848431 21854451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1577 473 658 Miscellaneous Gene Families AT5G08390 20.619 2.77e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1577 K14558 - gmx:100793629 1787.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1577 15 21848431 21854451 Gso9g0702 9 10097765 10104066 GST