Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1215 ATGGGTGTTTACTCTGACACAGATGAGTACCCCTCTCCAATCTCTCCATCAAGGTTGTTCAAGGCCTTGGTTGTTGATGCTCACAACCTCATTCCAAAACTTCTGCCAAATTCTGTGAAGAGCATTGAAATCATACAAGGGGATGGGGGGGCAGGAAGCATCAAGCAGTTTAACTTTGTTGAAGGCAACCAAGTAAAAAATATCAAGAACCGGATTGATGAGATAGACGAGGAGACACTTACTTACAATTACACACTGATTGAAGGGGAAGCCTTGAAGGATAAGTTTGCATCCATTGCTCATGAGATTAAGTTTGAAGCAGCACCTGATGGTGGTAGCATAAGTAAGGTAACAAGCAAGTATTATCTTAAAGGTGATGTTGAGATCAATGAAGAGGACATTAAGGCTAGCAAGGAGATTGTCTTGGGCATTTACAAAGTTGTGGAAGCCTATCTCCTGCAGAACCCTGATGTGTATGCTTGA 483 0.4224 MGVYSDTDEYPSPISPSRLFKALVVDAHNLIPKLLPNSVKSIEIIQGDGGAGSIKQFNFVEGNQVKNIKNRIDEIDEETLTYNYTLIEGEALKDKFASIAHEIKFEAAPDGGSISKVTSKYYLKGDVEINEEDIKASKEIVLGIYKVVEAYLLQNPDVYA* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1215 160 Pfam Pathogenesis-related protein Bet v 1 family 7 155 IPR000916 GO:0006952
Gso15g1215 160 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso15g1215 160 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso15g1215 160 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso15g1215 160 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso15g1215 160 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso15g1215 160 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso15g1215 160 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso15g1215 160 SMART Bet_v_1_2 3 155 IPR000916 GO:0006952
Gso15g1215 160 PANTHER - 1 160 - -
Gso15g1215 160 SUPERFAMILY Bet v1-like 5 159 - -
Gso15g1215 160 PANTHER MAJOR ALLERGEN PRU AR 1-LIKE 1 160 - -
Gso15g1215 160 CDD Bet_v1-like 7 152 - -
Gso15g1215 160 Gene3D - 1 160 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1215 Gso-Chr15 12122858 12123887 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1215 - - gmx:100815099 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1215 15 12122858 12123887 Gso9g0347 9 3351427 3354241 GST
Gso7g2060 7 44555725 44556742 Gso15g1215 15 12122858 12123887 PCT
Gso17g0240 17 2194796 2195802 Gso15g1215 15 12122858 12123887 PCT