Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1186 ATGAGAGTTTTGGAGAGTGCTTCTCCTGTTGAATCTGTCACTCATTTGAATATGGCTTTGCAGAAGTATGCTCCTTCTGGCAATGCACCTTCTGTTAATATGAAACATTTGAGCTTCTCCAGTAAGGTGCCTAAGAAAGCTGAGCTCGATGAAGCAAATCTGAATCACAACATGGATGTGGATATTGACCTTAGGGAAATTTATTTTCTCATTATGCACTTTCTTTCTGCTGGGCCATGTCATAAAACTCATTTACAGTTTTGGAATGAGCTTCTTGAGCATCAACTTTTGCCTAGAAGGTATCATGCTTGGTATTCAAGGACTGGGGCATGTAGTGGAGACAAAGATGATGATGGTCTATCATTCCCTTTAAATTACAATATGTTAGTAGAGAGGTATTCTCATATTGAAAAGGATCACTTGGTAAAGCTTTTGAAGCAATTGTTGTTAAATACAGCCTCCCCATCACTGGGTATGAATCTTGGAAATGCTCCAAATGCAGCTGATGTACCTACTCTTCTAGGAAGCGGTTCATTTTCACTTCTGAGCTATGATAGGGACAAAATGAAAGAAGTCAAATGGCCGCCTCCTCATATGCGCTGGCCTCATATGAAAGCCAATCAGGTTCATGGGCTTAATTTGAGGGAAATTGGGGGTGGTTTCCCAAGACACCACCGTGCACCATCTATACGTGCTGCATGCTATGCCATTGCAAAACCTTCTACCATGGTGCAAAAGATGCAAAATATCAAGAGGTTAAGAGGACATCGCAATGCTGTCTATTGTGCTATATTTGATCGGGCAGGAAGATATGTGATTACTGGTTCCGATGACCGACTTGTAAAAATTTGGTCAATGGAAACTGCATATTGTTTGGCCAGTTGCCGTGGACATGATGGTGACATCACTGACTTGGCTGTGAGTTCAAACAATGCTTTAGTTGCATCCTCATCAAATGACTGTGTCATTCGAGTTTGGCGCTTGCCAGATGGCTTGCCAATATCAGTTTTGCGGGGACATACTGGAGCTGTTACAGCCATAGCATTTAGTCCCAGACCGAATGCTGTATACCAGCTTTTATCTTCCTCTGATGATGGAACTTGTAGGATATGGGATGCAAGGTATACCCAGTCAAGTCCAAGATTATATGTTCCAAGGCCTTCTGATTCTGTAATTGGGAAGAGCAATGGCCCATCTTCAAGTACTGTACCACAGAGCCATCAGATTTTTTGCTGTGCATTTAATGCTAATGGAACTGTCTTTGTAACTGGTAGCTCTGACAATCTTGCTAGGGTGTGGAATGCTTGTAAACTTAGTATGGATGACACTGGCCAACCCGTTCATGAGATAGATGTGCTATCTGGGCATGAAAATGATGTGAATTATGTGCAATTCAGTGGATGTGCAGTAGCATCTCGGTTTTCCACAGCAGAAACTTGGAAGGAGGAAAATATTCCCAAATTTAAAAATTCCTGGTTGAATCATGACAACATAGTTACCTGCTCTCGAGATGGGAGTGCTATTATATGGATTCCTAAATCACGAAGGTCACATGGAAAAAGTGGTCGCTGGACCCGAGCATATCATCTGAGAGTTCCACCTCCACCTATGCCTCCTCAACCTCAAAGAGGTGGTCCTCGTCAGAGAATTCTACCAACTCCACGCGGTGTAAATATGATTGTTTGGAGCCTTGACAACCGCTTTGTCCTTGCAGCTATTATGGACTGCAGAATTTGTGTTTGGAATGCATCTGATGGAAGCTTAGTACACTCATTGACTGGGCATACTGAATCTACATATGTTCTGGATGTTCATCCTTTCAATCCCCGGATAGCTATGAGTGCTGGATATGATGGAAGAACCATCGTGTGGGATATATGGGAAGGCTTGCCTATCCGGACATATGAGATATCACGTTTCAAGTTGGTGGATGGAAAGTTTTCTCCGGATGGGACATCAATTATACTTTCGGATGATGTTGGTCAACTATATATATTAAGCACAGGCCAAGGCGAGTCTCAGAAAGATGCCAAATATGATCAGTTTTTTCTTGGTGATTATCGACCTCTGATTCAAGACACTCATGGTAACGTACTAGACCAGGAAACTCAAATTGTTCCATATCGACGGAGTCTGCAAGATTTGCTTTGTGATTCAGCAATGATACCATACCCAGAACCTTATCAGAGTGAATTTCAGCAAAGACGATTAGGAGCATTAGGCTTTGAGTGGCGCCCATCATCACTAAGACTCGCTGTTGGTCCTGATTTCAGTCTGGACCCCGATTATCATATGCTTCCATTGGCAGACTTGGATTTGCTTACAGAACCACTGCCTGAGTTTATAGATGCTATGGAATGGGAACCTGAAGTTGAAGTGTTTAGTGATGATACAGATTCAGAATATAATGTCACTGAGGATTTCTCTTCTAAGGGTGAGAAAGGGTGTTCAAGCTCCAATGCTTCTGGTGATTCAGGGTGCAGCACAGATAACAGTGAAGGGGAGGACACTTGCATGGATAACATTCGTAGATCAAAGAGGAAAAAACAAAAGACTGAGACCGAGGTTATGACTTCTTCTGGGAGACGTGTGAAACGGAGGAATTTGGATGAGCGTGATGGCAATACTTTTGGCAGTAGCCGAAGTAGGAAGGGGAAAAGTGTCCAAAAAACATTAAGAAGGAAATCTTCTAAATCAAAATCTTCCCGACCTCAAAGGGCTGCTGCGCGCAATGCTCTGCATCTATTTTCCAAAATTACTGGTACACCAACAGATGGAGAAGAAGATAGTTTGGTCGGTGATTTTTCAGGTAGTGAATCAACATTGCAAGAGTCTAATATTGACAGTGATGAATCTGATGGAACTTTACAGAATGAACAACTGAATTATTCTAAGGGAAAAGAAGTATCATATTATGAATCAGAGAACACCAAATCTCACGAGTTAACTGAAACTCATGTGAATTTGATGAACAAGAGGAGGTTGGTTCTCAAGTTGCCAAATCGTGATATATCCAAGTCCACAAATGAGTTTGACTACCAGACTGAGTTGGTTGGCTCATCATCAAAATCTTCTCAAGAAGCTACTGATTTTAATGGGAATGGACCAAGTTCTAAGGATTCAGGGTATTATTCTGGCAGTACAAGTTACCCCACAGTTGAAACAACAGATCAAGCAAAACTAGACCAGGTGACAGACCATGTAGACTTGCTGGGGAAAATTAGATGGGGAATGGTTAGGGCTCGTTCATCTAAACCTTTGAGAGTGGGAGAAGCTATGCCATCAGACACAAATCCCTACTCTGGAAAATGTCCTAATCATCTTGATGAAAAAGAAAATGTTGGCAGTGGGCATGAGAAAGAGGACAAGAATTTTAGTGCACTAACCCCCGAGTTAGAAATCCAAAAGGATGACCACAAGTTAGATAGTTTGACAGAGATTAATTATGAAAAAGAAAATGTTAGCAGTGGGCATGAGAAAGAGGACAAGAATGCCAGTGCATTAACCCCCGAGTTAGAAATCCAGAAGGATGACTATAAGGTAGATAGTTTGACAGAGATTAATGAAAATTGTGCTGGTACTACCTCACAGCCTTTTAATCCTACTGAGGATGGAAGAGAGATCACAGCTTCCAGCAATTGCAGGGACAAAGATGAATCACTAATTTCTGCTTATGTGATTCCTCAGGATATTGTTCCTGCTTCCATCAGCTATAGTGAGGTTGACCAACTACCTGAACTAAATATTGGTTTTCCTTCTGTTTTAACAAAATTAAGGTCTAAAAGGGGTTCAAGGGATCCTGAAAGTCCATCCAAGCATGAAACAAAATCTTCAGTGCTAAAGAATAGTGCATGTAGCACTAATGATAAGAATAATTTCAACAATGAACAGCATGTGGTTGTGGATGACCACAACAACACTAGAGTAGCATCTAATCAGGGAGAGAATGGATCTCAAGAAGTAGATCCTCAGATTAGGCAAAATAGTACTTCACAGGATTTGCCAGAACCACATTCACAAAGAGATAAAATGTATAAAGCTGTTTATAGAAGATCAAGATCTCATAGGGCTGTGACTAATTTAGCTGACAGTAGTGGCCAGGGAGAATTCAATTCAAATGGGAGAAACAGTAATTTCAATGCTACAGCAAACTTCAGCAATGGCACAAATGAAGCTATTCATACAAATGGATCCTTAGAGTTGGAACCAACCACTTGTGATCCAAATTATGAGCGGAATAATCTCAAAGTGCTGCAAGGACCTGGAAATTGTATGGTTAAAAGTCCACAGAATGTTTCCACAAGTGGAGGACAACTCACAGAAGAAGAAAGGGGTTCTAATTCAAAATTGACTGTTGGTTTAAGGTCCAATAGAAATCGGAGGTCTAGTTATAATATTTGTGAGACTAGTCCTGTAAATAAAAGGAAATCACTACAATCAGCTACCAGAGGATCATGGTTGCTGTTATCAACCCATGAGGAAGGATGCAGATATATTCCCCAACAGGGGGATGAAGTTGCATATTTGAGACAGGGGCACCAGGAGTATATAGATTATTGCCGTAAAAGAGAGTCAGGGCCTTGGGTATCACTTAAGGGACATATAAGAGCTGTAGAATATTGTAGAGTTCAAAGTCTAGAGTATTCCCATCTTCCAGGGTCCGGTGATAGCTGCTGCAAAATGAACCTTCAGTTTGTAGATCCTAATTCAAGTGTTGTTGGAAAATCTTTTAAATTAACCCTACCTGAAGTGACCAGTTTCCCAGATTTTCTTGTTGAAAGAACCAGGTTTGACGCTGCTATGCAAAGAAATTGGACACGCAGGGATAAATGCAGGGTTTGGTGGAAGAATGAGGATAGTTCCTCTGGTAATTGGTGGGATGGTCGAATTCTGTGCATGAAAGCCAAGTCTTCTGAATTTCCAGACAGTCCATGGGAGAGTTATACTGTTCGTTACAAGAGTGACCTCACTGAAACACATTTGCATAGTCCTTGGGAGCTTTTTGATGCTGATACTGAATGGGAACAGCCTCACATTGATGATGACATGAGAAATAAACTGCAGTCCACACTCACCAAATTACAGCAGTCAGGCAACCCAGTCCAGGATCGTTATGGAGTGCATGAATTGAAGAAAATTTCAAATAAGTCCAAATTTATAAACAGGTTTCCTGTTCCTATATCTATTGAATTGATACAGTCAAGGTTGGAGAACAATTACTACCGTAGTTTGGAGGCACTGAAGCATGATGTGAGTATTCTACTGTCTAATGCCACCACTTTTCTTGAAAAGGATGCAGCGCTGTCAGCAAAAATCAAACGCCTTTCAGAATGGTTCACACGGGCATTATCATCTCTATAG 5361 0.4128 MRVLESASPVESVTHLNMALQKYAPSGNAPSVNMKHLSFSSKVPKKAELDEANLNHNMDVDIDLREIYFLIMHFLSAGPCHKTHLQFWNELLEHQLLPRRYHAWYSRTGACSGDKDDDGLSFPLNYNMLVERYSHIEKDHLVKLLKQLLLNTASPSLGMNLGNAPNAADVPTLLGSGSFSLLSYDRDKMKEVKWPPPHMRWPHMKANQVHGLNLREIGGGFPRHHRAPSIRAACYAIAKPSTMVQKMQNIKRLRGHRNAVYCAIFDRAGRYVITGSDDRLVKIWSMETAYCLASCRGHDGDITDLAVSSNNALVASSSNDCVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPNAVYQLLSSSDDGTCRIWDARYTQSSPRLYVPRPSDSVIGKSNGPSSSTVPQSHQIFCCAFNANGTVFVTGSSDNLARVWNACKLSMDDTGQPVHEIDVLSGHENDVNYVQFSGCAVASRFSTAETWKEENIPKFKNSWLNHDNIVTCSRDGSAIIWIPKSRRSHGKSGRWTRAYHLRVPPPPMPPQPQRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGLPIRTYEISRFKLVDGKFSPDGTSIILSDDVGQLYILSTGQGESQKDAKYDQFFLGDYRPLIQDTHGNVLDQETQIVPYRRSLQDLLCDSAMIPYPEPYQSEFQQRRLGALGFEWRPSSLRLAVGPDFSLDPDYHMLPLADLDLLTEPLPEFIDAMEWEPEVEVFSDDTDSEYNVTEDFSSKGEKGCSSSNASGDSGCSTDNSEGEDTCMDNIRRSKRKKQKTETEVMTSSGRRVKRRNLDERDGNTFGSSRSRKGKSVQKTLRRKSSKSKSSRPQRAAARNALHLFSKITGTPTDGEEDSLVGDFSGSESTLQESNIDSDESDGTLQNEQLNYSKGKEVSYYESENTKSHELTETHVNLMNKRRLVLKLPNRDISKSTNEFDYQTELVGSSSKSSQEATDFNGNGPSSKDSGYYSGSTSYPTVETTDQAKLDQVTDHVDLLGKIRWGMVRARSSKPLRVGEAMPSDTNPYSGKCPNHLDEKENVGSGHEKEDKNFSALTPELEIQKDDHKLDSLTEINYEKENVSSGHEKEDKNASALTPELEIQKDDYKVDSLTEINENCAGTTSQPFNPTEDGREITASSNCRDKDESLISAYVIPQDIVPASISYSEVDQLPELNIGFPSVLTKLRSKRGSRDPESPSKHETKSSVLKNSACSTNDKNNFNNEQHVVVDDHNNTRVASNQGENGSQEVDPQIRQNSTSQDLPEPHSQRDKMYKAVYRRSRSHRAVTNLADSSGQGEFNSNGRNSNFNATANFSNGTNEAIHTNGSLELEPTTCDPNYERNNLKVLQGPGNCMVKSPQNVSTSGGQLTEEERGSNSKLTVGLRSNRNRRSSYNICETSPVNKRKSLQSATRGSWLLLSTHEEGCRYIPQQGDEVAYLRQGHQEYIDYCRKRESGPWVSLKGHIRAVEYCRVQSLEYSHLPGSGDSCCKMNLQFVDPNSSVVGKSFKLTLPEVTSFPDFLVERTRFDAAMQRNWTRRDKCRVWWKNEDSSSGNWWDGRILCMKAKSSEFPDSPWESYTVRYKSDLTETHLHSPWELFDADTEWEQPHIDDDMRNKLQSTLTKLQQSGNPVQDRYGVHELKKISNKSKFINRFPVPISIELIQSRLENNYYRSLEALKHDVSILLSNATTFLEKDAALSAKIKRLSEWFTRALSSL* 1787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1186 1786 MobiDBLite consensus disorder prediction 1016 1051 - -
Gso15g1186 1786 MobiDBLite consensus disorder prediction 836 879 - -
Gso15g1186 1786 SUPERFAMILY WD40 repeat-like 244 668 IPR036322 GO:0005515
Gso15g1186 1786 MobiDBLite consensus disorder prediction 1276 1293 - -
Gso15g1186 1786 ProSiteProfiles Trp-Asp (WD) repeats profile. 253 294 IPR001680 GO:0005515
Gso15g1186 1786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 295 328 - -
Gso15g1186 1786 CDD Bromo_WDR9_I_like 1658 1786 - -
Gso15g1186 1786 MobiDBLite consensus disorder prediction 886 901 - -
Gso15g1186 1786 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 26 1786 - -
Gso15g1186 1786 Gene3D - 1680 1786 IPR036427 GO:0005515
Gso15g1186 1786 MobiDBLite consensus disorder prediction 1260 1293 - -
Gso15g1186 1786 MobiDBLite consensus disorder prediction 1419 1455 - -
Gso15g1186 1786 SUPERFAMILY Bromodomain 1723 1784 IPR036427 GO:0005515
Gso15g1186 1786 Gene3D - 230 397 IPR015943 GO:0005515
Gso15g1186 1786 MobiDBLite consensus disorder prediction 1308 1342 - -
Gso15g1186 1786 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 634 IPR001680 GO:0005515
Gso15g1186 1786 MobiDBLite consensus disorder prediction 1358 1383 - -
Gso15g1186 1786 Pfam WD domain, G-beta repeat 248 285 IPR001680 GO:0005515
Gso15g1186 1786 Pfam WD domain, G-beta repeat 586 625 IPR001680 GO:0005515
Gso15g1186 1786 Pfam WD domain, G-beta repeat 291 326 IPR001680 GO:0005515
Gso15g1186 1786 Pfam WD domain, G-beta repeat 405 434 IPR001680 GO:0005515
Gso15g1186 1786 Pfam WD domain, G-beta repeat 333 372 IPR001680 GO:0005515
Gso15g1186 1786 MobiDBLite consensus disorder prediction 1260 1275 - -
Gso15g1186 1786 Gene3D - 491 683 IPR015943 GO:0005515
Gso15g1186 1786 Gene3D - 398 487 IPR015943 GO:0005515
Gso15g1186 1786 SMART WD40_4 585 625 IPR001680 GO:0005515
Gso15g1186 1786 SMART WD40_4 544 582 IPR001680 GO:0005515
Gso15g1186 1786 SMART WD40_4 396 434 IPR001680 GO:0005515
Gso15g1186 1786 SMART WD40_4 443 511 IPR001680 GO:0005515
Gso15g1186 1786 SMART WD40_4 246 285 IPR001680 GO:0005515
Gso15g1186 1786 SMART WD40_4 288 327 IPR001680 GO:0005515
Gso15g1186 1786 SMART WD40_4 330 372 IPR001680 GO:0005515
Gso15g1186 1786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 337 372 - -
Gso15g1186 1786 PANTHER WD REPEAT DOMAIN 9 26 1786 - -
Gso15g1186 1786 ProSiteProfiles Trp-Asp (WD) repeats profile. 337 381 IPR001680 GO:0005515
Gso15g1186 1786 MobiDBLite consensus disorder prediction 810 835 - -
Gso15g1186 1786 MobiDBLite consensus disorder prediction 1424 1455 - -
Gso15g1186 1786 Pfam Bromodomain 1722 1769 IPR001487 GO:0005515
Gso15g1186 1786 MobiDBLite consensus disorder prediction 795 961 - -
Gso15g1186 1786 ProSiteProfiles Bromodomain profile. 1726 1769 IPR001487 GO:0005515
Gso15g1186 1786 CDD WD40 249 625 - -
Gso15g1186 1786 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 336 IPR001680 GO:0005515
Gso15g1186 1786 ProSitePatterns Trp-Asp (WD) repeats signature. 612 626 IPR019775 -
Gso15g1186 1786 MobiDBLite consensus disorder prediction 1087 1122 - -
Gso15g1186 1786 ProSiteProfiles Trp-Asp (WD) repeats profile. 402 434 IPR001680 GO:0005515
Gso15g1186 1786 MobiDBLite consensus disorder prediction 934 961 - -
Gso15g1186 1786 MobiDBLite consensus disorder prediction 1308 1335 - -
Gso15g1186 1786 MobiDBLite consensus disorder prediction 1105 1122 - -
Gso15g1186 1786 MobiDBLite consensus disorder prediction 1356 1383 - -
Gso15g1186 1786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 253 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1186 Gso-Chr15 11740884 11765730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1186 556 670 Miscellaneous Gene Families AT5G08390 26.496 3.67e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1186 K11797 - gmx:100818665 3558.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1186 15 11740884 11765730 Gso9g0319 9 3059003 3079896 GST