Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0203 ATGAACGGTGGCGATGAGGTAGTGGCAGCTCCGGCGGCTCCACCGCACCCTCTGGAGTGGAAATTCTCGCAGGTCTTCGGAGAACGCACGGCAGGGGAAGAGGTTCAGGAAGTGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGAGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATCATGGTGGATCAAGAAGGGATTTGGAGAGGATGGACTATTCTATTGGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCATGAGCCAGAGTTTGACTATCTTAAGAGTTTGGAGATTGAAGAGAAAATCAACAAAATCAGATGGTGCCAAACAGCTAATGGTGCCCTGTTCCTTCTTTCTACAAATGATAAAACGATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTCAAGAAGATTTCTGAGATGAATGTTGACCCTTCAAAATCTATGGGGAATGGATCTATTGCTAGTTCAAGCAATTCAAGTAGTTCTAGGCCATATCTTGTAAATGGAGGATCTCCAGATAGATACAATTATATAAGCAATGACTTTTCATTTCCACCAGGAGGCCTACCATCACTAAGATTACCCATGGTAAGTAGCCATGAAACCAGTTTAGTTGCTCGATGTCGTAGAGTGTATGCACACGCTCATGATTATCACATCAATTCTATTTCAAATAACAGCGATGGTGAAACTTTCATATCAGCTGATGATTTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGAGGTTATAACATCAGCAGAATTTCACCCTACACATTGTAATACGTTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGACAATCAGCATTATGTGATTCTCATGCTAAACTATTTGAGGAACAGGAAGCCCCAGGGTCCAGATCATTTTTCACAGAGATTATTGCTTCTATCTCAGACATAAAATTTGGGAAGGATGGAAGATACATACTAAGTCGTGATTACATGACTTTAAAGTTGTGGGACATTAATATGGATTCAGGCCCCGTTGCAACTTTCCAGGTTCATGAGTATTTGAGACCCAAGCTTTGTGATTTATATGAAAATGATTCAATCTTCGATAAGTTCGAATGTTGTCTAAGTGGTGATGGATTGCGCGTAGCAACTGGTTCTTACAGTAATCTATTTCGTGTGTTTGGTTGTGCCCCTGGAAGTGCTGAGGCTACAACTCTAGAAGCCAGTAAAAATCCAATGAGACGACAAGTTCCAACCCCTTCAAGGCCTTCGAGATCACTGGGAAATAGTATAACACGTGTTGTAAGACGGGGAGCAGAAGCCCCTGGAGTGGATGCTAATGGGAATTCTTTTGATTTCACAACAAAGTTGCTGCACTTAGCATGGCATCCAAGTGAGAATTCAATTGCTTGTGCTGCTGCAAATAGCTTGTACATGTACTATGCGTAA 1545 0.4129 MNGGDEVVAAPAAPPHPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMDYSIGRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKISEMNVDPSKSMGNGSIASSSNSSSSRPYLVNGGSPDRYNYISNDFSFPPGGLPSLRLPMVSSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSAEATTLEASKNPMRRQVPTPSRPSRSLGNSITRVVRRGAEAPGVDANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0203 514 Gene3D - 86 512 IPR015943 GO:0005515
Gso15g0203 514 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 231 245 IPR018067 -
Gso15g0203 514 MobiDBLite consensus disorder prediction 442 461 - -
Gso15g0203 514 PIRSF PPA2_B55 10 514 IPR000009 GO:0000159|GO:0019888
Gso15g0203 514 SMART WD40_4 222 261 IPR001680 GO:0005515
Gso15g0203 514 SMART WD40_4 105 145 IPR001680 GO:0005515
Gso15g0203 514 SMART WD40_4 373 427 IPR001680 GO:0005515
Gso15g0203 514 SMART WD40_4 272 312 IPR001680 GO:0005515
Gso15g0203 514 SMART WD40_4 31 66 IPR001680 GO:0005515
Gso15g0203 514 SMART WD40_4 331 369 IPR001680 GO:0005515
Gso15g0203 514 MobiDBLite consensus disorder prediction 157 182 - -
Gso15g0203 514 MobiDBLite consensus disorder prediction 160 182 - -
Gso15g0203 514 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 3 514 IPR000009 GO:0000159|GO:0019888
Gso15g0203 514 SUPERFAMILY WD40 repeat-like 39 506 IPR036322 GO:0005515
Gso15g0203 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Gso15g0203 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Gso15g0203 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Gso15g0203 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 233 260 IPR000009 GO:0000159|GO:0019888
Gso15g0203 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 261 288 IPR000009 GO:0000159|GO:0019888
Gso15g0203 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 289 317 IPR000009 GO:0000159|GO:0019888
Gso15g0203 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 318 345 IPR000009 GO:0000159|GO:0019888
Gso15g0203 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 346 373 IPR000009 GO:0000159|GO:0019888
Gso15g0203 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 374 399 IPR000009 GO:0000159|GO:0019888
Gso15g0203 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 400 426 IPR000009 GO:0000159|GO:0019888
Gso15g0203 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 483 512 IPR000009 GO:0000159|GO:0019888
Gso15g0203 514 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Gso15g0203 514 Pfam WD domain, G-beta repeat 225 261 IPR001680 GO:0005515
Gso15g0203 514 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 3 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0203 Gso-Chr15 1798974 1806818 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0203 K04354 - gmx:100799449 998.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0203 15 1798974 1806818 Gso11g3608 11 51779328 51787693 GST
Gso15g0203 15 1798974 1806818 Gso7g0103 7 923545 936940 PCT
Gso15g0203 15 1798974 1806818 Gso8g1617 8 15817701 15825661 PCT
Gso7g0103 7 923545 936940 Gso15g0203 15 1798974 1806818 PCT
Gso8g1617 8 15817701 15825661 Gso15g0203 15 1798974 1806818 PCT