Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3608 ATGAACGGTGGCGATGAGGTCGTGGCAGCTCCGGCGGGTCCGCCGCACCCTCTGGAGTGGAAATTTTCGCAGGTCTTCGGAGAACGCACGGCAGGGGAAGAGGTTCAGGAAGTGGACATAATTTCAGCTATTGAATTTGACAAGTCCGGTGATCATCTTGCTACTGGTGATCGGGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATCATGGTGGATCAAGTAGGGATTTGGAGAGGGTGGACTATTCTATTGGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCACGAACCAGAGTTTGACTATCTTAAGAGTTTGGAAATTGAAGAGAAAATCAACAAAATCAGATGGTGCCAAATAGCTAATGGTGCCCTCTTCCTTCTTTCTACAAATGATAAAACAATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATTTCTGAGATGAATGTTGACCCTTCAAAATCAATGGGGAATGGATCTATTGCTAGTTCAAGCAATTCAAGTAGTTCTAGGCCATATCTTGCAAATGGAGGATCTCCAGATAGATACAATTATATAAGCAATGACTTTTCATTTCCACCAGGAGGCATACCATCACTAAGATTACCCATGGTAGTAAGTAGCCATGAAACCAGCTTAGTTGCCCGATGCCGTAGAGTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAGCGATGGCGAAACTTTCATATCAGCCGATGATCTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGAGGTTATAACATCAGCAGAATTTCACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATCCGTCTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACTATTTGAGGAACAGGAAGCTCCAGGGTCCAGATCATTTTTCACGGAGATTATTGCTTCTATCTCGGACATAAAATTTGGGAAGGATGGTAGATACATACTTAGTCGTGATTACATGACTTTAAAGTTGTGGGACATTAATATGGATTCAGGCCCCGTTGCAACTTTCCAGGTTCATGAGTATTTAAGACCCAAGCTTTGCGATTTATATGAAAATGACTCAATCTTTGATAAGTTCGAATGTTGTCTAAGTGGTGATGGATTGCGCTTAGCAACTGGTTCTTACAGCAATCTATTTCGTGTGTTTGGTTGTGCTCCTGGAAGTGCTGAGGCTACAACTCTAGAAGCCAGTAAAAATCCAATGAGACGGCTAGTTCCAACCCCTTCAAGGCCTTCGAGATCACTGGGAAATAGTATAACACGTGTTGTAAGACGGGGAGCAGAAACCCCTGGAGTGGATGCTAATGGGAATTCTTTTGATTTCACAACAAAGTTGCTGCACTTAGCATGGCATCCAAGTGAGAATTCAATTGCTTGTGCTGCTGCAAATAGCTTGTACATGTACTATGCGTAA 1548 0.418 MNGGDEVVAAPAGPPHPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSSRDLERVDYSIGRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQIANGALFLLSTNDKTIKFWKVQEKKVKKISEMNVDPSKSMGNGSIASSSNSSSSRPYLANGGSPDRYNYISNDFSFPPGGIPSLRLPMVVSSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRLATGSYSNLFRVFGCAPGSAEATTLEASKNPMRRLVPTPSRPSRSLGNSITRVVRRGAETPGVDANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3608 515 SUPERFAMILY WD40 repeat-like 39 507 IPR036322 GO:0005515
Gso11g3608 515 PIRSF PPA2_B55 12 515 IPR000009 GO:0000159|GO:0019888
Gso11g3608 515 SMART WD40_4 273 313 IPR001680 GO:0005515
Gso11g3608 515 SMART WD40_4 332 370 IPR001680 GO:0005515
Gso11g3608 515 SMART WD40_4 105 145 IPR001680 GO:0005515
Gso11g3608 515 SMART WD40_4 374 428 IPR001680 GO:0005515
Gso11g3608 515 SMART WD40_4 31 66 IPR001680 GO:0005515
Gso11g3608 515 SMART WD40_4 223 262 IPR001680 GO:0005515
Gso11g3608 515 Gene3D - 69 513 IPR015943 GO:0005515
Gso11g3608 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Gso11g3608 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Gso11g3608 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Gso11g3608 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 234 261 IPR000009 GO:0000159|GO:0019888
Gso11g3608 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 262 289 IPR000009 GO:0000159|GO:0019888
Gso11g3608 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 290 318 IPR000009 GO:0000159|GO:0019888
Gso11g3608 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 319 346 IPR000009 GO:0000159|GO:0019888
Gso11g3608 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 347 374 IPR000009 GO:0000159|GO:0019888
Gso11g3608 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 375 400 IPR000009 GO:0000159|GO:0019888
Gso11g3608 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 401 427 IPR000009 GO:0000159|GO:0019888
Gso11g3608 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 484 513 IPR000009 GO:0000159|GO:0019888
Gso11g3608 515 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Gso11g3608 515 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 232 246 IPR018067 -
Gso11g3608 515 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 3 515 IPR000009 GO:0000159|GO:0019888
Gso11g3608 515 Pfam WD domain, G-beta repeat 226 262 IPR001680 GO:0005515
Gso11g3608 515 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 3 515 - -
Gso11g3608 515 MobiDBLite consensus disorder prediction 160 183 - -
Gso11g3608 515 MobiDBLite consensus disorder prediction 157 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3608 Gso-Chr11 51779328 51787693 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3608 K04354 - gmx:100790801 1003.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0203 15 1798974 1806818 Gso11g3608 11 51779328 51787693 GST
Gso11g3608 11 51779328 51787693 Gso7g0103 7 923545 936940 PCT
Gso11g3608 11 51779328 51787693 Gso8g1617 8 15817701 15825661 PCT
Gso7g0103 7 923545 936940 Gso11g3608 11 51779328 51787693 PCT
Gso8g1617 8 15817701 15825661 Gso11g3608 11 51779328 51787693 PCT