Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1821 ATGGCTGAAGATCCTCAAGACGTAGCCGATAGGGAGCGAATTTTCAAGCGTTTTGACGCCAATGGCGATGGCCAAATCTCTTCAGCTGAGCTTGGAGAAGCACTCAAGGCCCTTGGATCAGTCACAGCAGAAGAGGTGAAAAGGATGATGGAAGAGATTGACACTGATGGAGATGGCTACATTTCATATCAAGAGTTCACAGAATTCGCCAAAGCCAACCGTGGCCTAGTCAAAGATGTTGCCAAGATTTTTTAA 255 0.4627 MAEDPQDVADRERIFKRFDANGDGQISSAELGEALKALGSVTAEEVKRMMEEIDTDGDGYISYQEFTEFAKANRGLVKDVAKIF* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1821 84 SMART efh_1 10 38 IPR002048 GO:0005509
Gso14g1821 84 SMART efh_1 45 73 IPR002048 GO:0005509
Gso14g1821 84 Gene3D - 2 84 - -
Gso14g1821 84 PANTHER POLCALCIN NIC T 1 1 84 - -
Gso14g1821 84 ProSiteProfiles EF-hand calcium-binding domain profile. 44 76 IPR002048 GO:0005509
Gso14g1821 84 ProSitePatterns EF-hand calcium-binding domain. 19 31 IPR018247 -
Gso14g1821 84 SUPERFAMILY EF-hand 8 70 IPR011992 -
Gso14g1821 84 ProSitePatterns EF-hand calcium-binding domain. 54 66 IPR018247 -
Gso14g1821 84 CDD EFh 12 71 IPR002048 GO:0005509
Gso14g1821 84 PANTHER TROPONIN 1 84 - -
Gso14g1821 84 Pfam EF-hand domain pair 13 70 IPR002048 GO:0005509
Gso14g1821 84 ProSiteProfiles EF-hand calcium-binding domain profile. 6 41 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1821 Gso-Chr14 50562047 50562547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1821 4 84 EF-hand Containing Proteins AT3G03430 75.309 3.28e-41 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1821 K13448 - gmx:100806709 166.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1821 14 50562047 50562547 Gso2g2097 2 45581317 45581814 GST
Gso13g1267 13 27956795 27957484 Gso14g1821 14 50562047 50562547 PCT
Gso14g1821 14 50562047 50562547 Gso13g1267 13 27956795 27957484 PCT