Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1267 ATGGCTGATGATGATCCACAAGATGTAGCCGATAGGGAACGCATTTTCAAGCATTTTGATTCCGATGGTGATGGCCAAGTCTCTTCACAAGAGCTTGGTGATGCCCTTAAAGCACTTGGATCGGTGACCCCGGAAGAAGTGCAACGGATGATGGCAGAGATTGATACAGATGGTGATGGCTTCATTTCACACGATACAGATGGTGATGGCTTCATTTCACACGAAGAGTTCATAAATTTTGCACGAGCCAACCGTGGCCTAGTGAGGGATGTAGCCAAGATTTTTGGTTTTTTAAGTTCTTGCTCTTAA 309 0.4498 MADDDPQDVADRERIFKHFDSDGDGQVSSQELGDALKALGSVTPEEVQRMMAEIDTDGDGFISHDTDGDGFISHEEFINFARANRGLVRDVAKIFGFLSSCS* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1267 102 Gene3D - 2 65 - -
Gso13g1267 102 PANTHER POLCALCIN NIC T 1 4 64 - -
Gso13g1267 102 PANTHER POLCALCIN NIC T 1 65 95 - -
Gso13g1267 102 SUPERFAMILY EF-hand 8 83 IPR011992 -
Gso13g1267 102 PANTHER TROPONIN 4 64 - -
Gso13g1267 102 PANTHER TROPONIN 65 95 - -
Gso13g1267 102 CDD EFh 13 63 IPR002048 GO:0005509
Gso13g1267 102 Pfam EF hand 65 80 IPR002048 GO:0005509
Gso13g1267 102 ProSitePatterns EF-hand calcium-binding domain. 65 77 IPR018247 -
Gso13g1267 102 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Gso13g1267 102 ProSiteProfiles EF-hand calcium-binding domain profile. 61 87 IPR002048 GO:0005509
Gso13g1267 102 Pfam EF-hand domain pair 14 63 IPR002048 GO:0005509
Gso13g1267 102 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Gso13g1267 102 SMART efh_1 11 39 IPR002048 GO:0005509
Gso13g1267 102 SMART efh_1 46 74 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1267 Gso-Chr13 27956795 27957484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1267 5 95 EF-hand Containing Proteins AT3G03430 60.440 5.66e-34 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1267 K13448 - gmx:100776519 208.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g1267 13 27956795 27957484 Gso14g1821 14 50562047 50562547 PCT
Gso13g1267 13 27956795 27957484 Gso2g2097 2 45581317 45581814 PCT
Gso14g1821 14 50562047 50562547 Gso13g1267 13 27956795 27957484 PCT
Gso2g2097 2 45581317 45581814 Gso13g1267 13 27956795 27957484 PCT