Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1613 ATGAGTGCTGAGATTGATTCAACTTATGCTCCTGAACCTCACAAAATGTCTGGAGCAACTACCAGTGGCCAAAAGCTCTCTATATTTTCTGCCAAATCTGGATTTGTCATCCCTAAAAACAAATTGTCAGGGTCGCTGGTCCCTATTTTCCGAGGGGCTAAACAACATGGGGTCACTGCTGCTGCCATCAATGAAGAAAGTTCAAAACAAATTGAGAGGAGATCAAAATGGGGTCCTGATCTCACACAAGATGCAGCTGTCAGGAGGGGAAAAGTTTTAGCTTTGCAGATTCGAGTGGATCAAATTACAAAGCAGTTGGAATCAGAAAAACTGGAAGTTGGGGACACTCAGAACTTGAATCCAGATCAAAGCATATCTGGCCCTCAAATTAACAGCAAGAAGGCAGAAATGCTCGAACTTGAAAAGCGGGAAGCAATAGGTGAAATACTAAAATTAGATCCCAGTTACAAGCCTCCACGTGGTTTTAAACCATTGTTAAAAGAAGCCAGCATTCCTTTGCCTGTCCAAGAATATCCTGGGTACAATTTTGTTGGTCTAATATATGGGCCTGAAGGTGATAATCAAAAACAACTAGAAAAGGAAACTGGTGCGAAGATAAAAATTCATGGAATCAAAGCAGACACAGGAGAGAAAGGTGAAATTAAACCCGGAACTGATATCCAGTGCAATTACAAAGAGATGCATGTTAACCTATCAGCTGATAGTTTTGAAAAAGTGGATGCTGCTATGTTAATCATTGAACTGCTAATCACCTCTGTAACAGAGAATTTAGCTGCTGGTTCTACACCCTCTATATCAGTTTCTAGGGACAGCACTAATGTTCTGAGTCAAAGGCAAGAAGGCCATGCAGATTCTCTATCTCTGGAAAACCAGGCTGTGTTGCAACCAGTAGCTGTTACACAAATGCATGGTGATAACTTCCAATACTCTAGTCCATGGTTTTCAGTGGTTCCATCTCATACCCCTGTGTTTGCTTCGTCTGGCACTGTAGCCCCCCCAAATCCACTAGGTCTTGCTAGAACTCCCCATTTTTCATCACAAACTTCAAACATGGCTTCGACTTTTGGTGCTCAACCTGGACCTGTTGCTGGATTTCAGTCGATTATTCCAAATCAACATGTTTCTGTGCAAACACCACCACCAAGACAGATTTTACAGTATTCGCATATGACTCAGACAAGTCCTTTGGGTCACATTGGGCCCCTAAGAAATCCTGTACAAAATTTGTCAACTCCAAATTCTTCATTTTCATTTCCTGTTACTTTAAGCCAAGCAATGCCAATAGGACAACATCAGACATCTGTGTCTTCAATGCATCTACCTATATCTGGTATATCATCACCACCGATACCTAACCAGCCATTGACCCATCTTGGTGTCTCTTCTGGCCTGAACGAAGCCCCTGTCACTGTTAAAATGTCTGTTGGTCCCAGCAATATGGGGCCAGTGGTTCCACCTGCAAGACCTGTTTCTCTACATCAACAGCCAGATGTTGCATTTAAGCCACCGCAGTCAAATATGTCAATGATTACACGATCTGCCACCTTTCTTCCACATCAAGTAGGAATTTCCCCTGGACAACCATCTTCTTTGAGATCAATGCCTGTACCAATACGTGCACCTACACATTTATCTGCAAACCATTTATCAGGACCTGTTTCATTTCCTTCACGTGGAATATCCCCTTCACTTCCATTGCCTCAGCAAGCAGGAATACCTAATCTTGCTTCTGGAGTTGCTCCTTATCACACCCATGTAAAACCACCAGTCTTGGGGACATCAAAATCTGGAAATTTTACTTTTCAATCACATCTGCCCAATGCAGACTATGGTCAAGTGTTTTCTGGACCAAACAGTCAATCAGGTGCTACACAAGAGCCACCTTCTGGTCCACGACCTCCACCATTTGGGTTTGCTGTGCCTGATCAGCCTCGTCAAATCTTTCCAAGGACACAATTCCCTGGTCAAGTGGATCAAGCCGTTCCCTTTGGGGTAAGATTAGGTTCCATCTCGAACTCAATTCCACCACCCAGACATGCTGTATTTCCATATGCTGGTCAACCTGCACCTAGATCGTCAGTCCCACAAATGGGTATGAAGAACTTCATTTCTGCCCCTCAAATGCCAAATTTGACCAATGCTGGTGCTCAAAGAGGCATGCCTATTCGGCAAAGCTATCCTCCTCAGATGGCACGGCCAGATATCCCAATGCCTCTGAATCAAAAGTTTGTCAACAATCCCCCCATGGCTTCTGGTAAGATAGCATATGCTGCGGACCAAATTTATGATCCCTTTTCACCCACTTCTGCACCTCCACAACAGAAAGGTAATCCTGGAAAATGA 2364 0.4365 MSAEIDSTYAPEPHKMSGATTSGQKLSIFSAKSGFVIPKNKLSGSLVPIFRGAKQHGVTAAAINEESSKQIERRSKWGPDLTQDAAVRRGKVLALQIRVDQITKQLESEKLEVGDTQNLNPDQSISGPQINSKKAEMLELEKREAIGEILKLDPSYKPPRGFKPLLKEASIPLPVQEYPGYNFVGLIYGPEGDNQKQLEKETGAKIKIHGIKADTGEKGEIKPGTDIQCNYKEMHVNLSADSFEKVDAAMLIIELLITSVTENLAAGSTPSISVSRDSTNVLSQRQEGHADSLSLENQAVLQPVAVTQMHGDNFQYSSPWFSVVPSHTPVFASSGTVAPPNPLGLARTPHFSSQTSNMASTFGAQPGPVAGFQSIIPNQHVSVQTPPPRQILQYSHMTQTSPLGHIGPLRNPVQNLSTPNSSFSFPVTLSQAMPIGQHQTSVSSMHLPISGISSPPIPNQPLTHLGVSSGLNEAPVTVKMSVGPSNMGPVVPPARPVSLHQQPDVAFKPPQSNMSMITRSATFLPHQVGISPGQPSSLRSMPVPIRAPTHLSANHLSGPVSFPSRGISPSLPLPQQAGIPNLASGVAPYHTHVKPPVLGTSKSGNFTFQSHLPNADYGQVFSGPNSQSGATQEPPSGPRPPPFGFAVPDQPRQIFPRTQFPGQVDQAVPFGVRLGSISNSIPPPRHAVFPYAGQPAPRSSVPQMGMKNFISAPQMPNLTNAGAQRGMPIRQSYPPQMARPDIPMPLNQKFVNNPPMASGKIAYAADQIYDPFSPTSAPPQQKGNPGK* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1613 787 ProSiteProfiles Type-1 KH domain profile. 182 208 - -
Gso13g1613 787 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 169 263 IPR036612 GO:0003723
Gso13g1613 787 SMART kh_6 165 258 IPR004087 GO:0003676
Gso13g1613 787 Pfam KH domain 182 224 IPR004088 GO:0003723
Gso13g1613 787 PANTHER RNA-BINDING PROTEIN RELATED 19 781 IPR045071 -
Gso13g1613 787 Coils Coil 92 112 - -
Gso13g1613 787 MobiDBLite consensus disorder prediction 1 22 - -
Gso13g1613 787 MobiDBLite consensus disorder prediction 615 633 - -
Gso13g1613 787 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN 19 781 - -
Gso13g1613 787 Gene3D K Homology domain, type 1 162 289 IPR036612 GO:0003723
Gso13g1613 787 MobiDBLite consensus disorder prediction 615 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1613 Gso-Chr13 31352425 31357992 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1613 K13095 - gmx:100777227 1566.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0009 18 121930 127413 Gso13g1613 13 31352425 31357992 GST