Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1610 ATGAAGAAAAAGAAGCAGGTGCCGGAGTGGATGAACAGTGCTCTGTGGTCCACCCCCTCCGACCATGGCCGCTTTGACCCACCCTCTCCTCCTCCTCCTCCCCCTGTTTCTGTTAAAGAAGATTCCCGGACAATCCCAACCAATCAGAATTCCTCTCCTCCTCCTTTTTCTTCTTCATCCGTTTCTTCTCCTACTGCTTCCGCCGATGACATCTCCCGGCAGGCCCAGGCCCAGGCTCAGGCTCAGGTTCAGTTGTTGGCCGAGTTATCTAGGAAGGTGATAGATATGCGCGAGTTGAGGAGAGTCGCTTCTCAAGGAATACCCGATGCTGCTTTGCGTCCCACCCTCTGGAAGCTTCTGCTTGGATATCTTCCTCCCGATCGTGCCCTTTGGTTCTCTGAATTAACCAAAAAGAGGTCCCAGTACAAAAATTTCAAAGACGACCTCCTCATGAATCCTTCAGAAATCACGAGGAGGATGTACAACTCCAACTCCAACTCCGCTGCTCATGATATCGATGATGCAAAATCTGATACTCAGACTGGGCTCTTGCTTTCTAGATCACAAATCACTCATCAGGACCACCCTTTGAGTCTTGGCAAGACCAGCATATGGAATCAGTTCTTCCAGGACACAGAGATCATAGAGCAGATTGACCGAGATGTCAAGCGTACTCATCCAGATATAGACTTCTTCTCTGGTGATTCTCATTTTGCAAAATCTAATCAGGAGGCTTTAAAGACCATATTAATTATTTTTGCAAAGTTGAACTCAGGTATAAGATATGTTCAAGGGATGAATGAAGTATTGGCTCCTCTCTTCTATGTGTTAAAAAATGACCCTGACGAGGAAAATGCAGCCTTTGCTGAAGCAGACACATTCTTTTGTTTTGTTGAGCTATTGAGTGGGTTCCAAGATAATTTTTGTCAACAACTTGATAATAGTATTTGTGGAATCCGTTCCACTATTACAAGATTGTCCCAGCTTTTAAAAGAACATGATGAAGAACTGTGGCGTCATCTTGAGGTCACTACTGAGGTTAATCCCCAATTCTATGCATTTAGGTGGATTACTCTCCTCTTGACACAGGAATTTAATTTTGCTGACATCCTTCATATTTGGGACGTCATTTTAAGTGATCCAGAGGGTCCACAGGAGACACTTCTCAGAATATGCTGCGCAATGCTAATTCTGGTTCGTAGGCGCCTTCTAGCGGGTGATTTCACTTCTAACCTCAAGTTGCTGCAAAGTTATCCATCTACAAACATTAGTCATTTGCTCCATGTAGCAAATAAGTTACGTGTACAGTCAGTCTAA 1317 0.445 MKKKKQVPEWMNSALWSTPSDHGRFDPPSPPPPPPVSVKEDSRTIPTNQNSSPPPFSSSSVSSPTASADDISRQAQAQAQAQVQLLAELSRKVIDMRELRRVASQGIPDAALRPTLWKLLLGYLPPDRALWFSELTKKRSQYKNFKDDLLMNPSEITRRMYNSNSNSAAHDIDDAKSDTQTGLLLSRSQITHQDHPLSLGKTSIWNQFFQDTEIIEQIDRDVKRTHPDIDFFSGDSHFAKSNQEALKTILIIFAKLNSGIRYVQGMNEVLAPLFYVLKNDPDEENAAFAEADTFFCFVELLSGFQDNFCQQLDNSICGIRSTITRLSQLLKEHDEELWRHLEVTTEVNPQFYAFRWITLLLTQEFNFADILHIWDVILSDPEGPQETLLRICCAMLILVRRRLLAGDFTSNLKLLQSYPSTNISHLLHVANKLRVQSV* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1610 438 MobiDBLite consensus disorder prediction 41 75 - -
Gso13g1610 438 MobiDBLite consensus disorder prediction 24 39 - -
Gso13g1610 438 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 200 309 - -
Gso13g1610 438 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 87 340 IPR035969 -
Gso13g1610 438 SMART tbc_4 103 407 IPR000195 -
Gso13g1610 438 Gene3D - 317 437 - -
Gso13g1610 438 Pfam Rab-GTPase-TBC domain 211 402 IPR000195 -
Gso13g1610 438 ProSiteProfiles TBC/rab GAP domain profile. 107 381 IPR000195 -
Gso13g1610 438 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 4 436 - -
Gso13g1610 438 MobiDBLite consensus disorder prediction 1 75 - -
Gso13g1610 438 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 318 435 IPR035969 -
Gso13g1610 438 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 4 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1610 Gso-Chr13 31328466 31333645 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1610 K24796 - gmx:100778830 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0012 18 144853 150427 Gso13g1610 13 31328466 31333645 GST