Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1573 ATGTCTCGGGTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATTTCTCTTTCAGGACAACTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCGAAATCTGCTGCCAAGCCTCTACAAGCTCCGCAGGGTTATTCATCCTCAGCTCCTTATTTAGGTTCTAATACCCCCTCTTCAATATATCTTGGTGTTCCACCATATGGATCTTCTCTGTTCAATGGATCATCTGTTCCTCCCTATGATGTTCCATTTTCTGGAGGATCAGCATATCACTACAATTATGGTAGTCGCCTTTCTGCTGGCAGTCCTTATAGACCATTGCATTTATCTGGACCAACACCCTACACAGGTGGACCAGTGATTGGAAATGGTGGGATATATGGAATGCCCCAACTGTTGGATCGGTATGGCCTGGGCATCCCTATCGGACCTGGGACAATGGGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAGGTACAGATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTTTCATTCAGAACTGTCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCACAGGCCTCAAAGTCGGACAAAAATTCTAAGCAAAAGATGCCTGAGGGAAGCTGGAAGTGCGAAAAGTGTAACAACATAAACTATCCTTTCAGAACCAAGTGCAACAGACAGAATTGTGGTGCTGACAAGCCGGCTGAGTCTGAAGAATCTCCTTCATCAGCTGCAGATCAAAATGATCAGAATATGACGAGAATGGGTTTTGGAGATAGAGGTGCCGATGTAACTAGAGAAGGTGCAACACTAGAGAACGACGAATGTGAAGAGCAACGTAACAGAACATGGTGTTCTTACGATTTTCAATTAATTTTTACGCTCTTGGAGGCCTTTGAGAAGGTGCCTTCGATTCAATTTTTGTTTTCATTCCGTTGGTGGCCTTATGATGGCGGAGGTAGCACATTGCAAAACTCAGAACGTGCATCGGACGTGATACCAGTGTTGTGTTTACCTTTTATATTTATTCAAATAAAACACTACTAA 1152 0.441 MSRVDNRNSSATKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAAKPLQAPQGYSSSAPYLGSNTPSSIYLGVPPYGSSLFNGSSVPPYDVPFSGGSAYHYNYGSRLSAGSPYRPLHLSGPTPYTGGPVIGNGGIYGMPQLLDRYGLGIPIGPGTMGARPGFFHDDKSQKKGTDATRDNDWTCPKCGNVNFSFRTVCNMRKCNTPKPGSQASKSDKNSKQKMPEGSWKCEKCNNINYPFRTKCNRQNCGADKPAESEESPSSAADQNDQNMTRMGFGDRGADVTREGATLENDECEEQRNRTWCSYDFQLIFTLLEAFEKVPSIQFLFSFRWWPYDGGGSTLQNSERASDVIPVLCLPFIFIQIKHY* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1573 383 SUPERFAMILY Ran binding protein zinc finger-like 16 54 IPR036443 -
Gso13g1573 383 MobiDBLite consensus disorder prediction 1 25 - -
Gso13g1573 383 MobiDBLite consensus disorder prediction 275 289 - -
Gso13g1573 383 PANTHER ZINC FINGER PROTEIN 5 285 - -
Gso13g1573 383 MobiDBLite consensus disorder prediction 220 242 - -
Gso13g1573 383 MobiDBLite consensus disorder prediction 50 75 - -
Gso13g1573 383 SUPERFAMILY Ran binding protein zinc finger-like 187 225 IPR036443 -
Gso13g1573 383 Gene3D - 228 271 - -
Gso13g1573 383 Gene3D - 14 54 - -
Gso13g1573 383 Gene3D - 185 225 - -
Gso13g1573 383 Pfam Zn-finger in Ran binding protein and others 22 44 IPR001876 -
Gso13g1573 383 Pfam Zn-finger in Ran binding protein and others 194 223 IPR001876 -
Gso13g1573 383 Pfam Zn-finger in Ran binding protein and others 239 269 IPR001876 -
Gso13g1573 383 SUPERFAMILY Ran binding protein zinc finger-like 233 270 IPR036443 -
Gso13g1573 383 PANTHER OS08G0521400 PROTEIN 5 285 - -
Gso13g1573 383 MobiDBLite consensus disorder prediction 9 25 - -
Gso13g1573 383 MobiDBLite consensus disorder prediction 264 297 - -
Gso13g1573 383 SMART zf_4 195 221 IPR001876 -
Gso13g1573 383 SMART zf_4 24 50 IPR001876 -
Gso13g1573 383 SMART zf_4 241 267 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1573 Gso-Chr13 31037303 31043324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1573 181 272 EF-hand Containing Proteins AT1G55040 31.522 7.80e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1573 - - gmx:100796535 802.357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0049 18 442942 446444 Gso13g1573 13 31037303 31043324 GST