Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1571 ATGAAGCAGCAGAGAGTGGAGTTTATGGGCCTGGGCCTTTTGGTGGTGATGATGGCATGTGGGTCGGCGAGTGGTGCGGATGATTTGGCAACCAAGTGTTCAGCGGTGATTCAGAAGGTAATACCGTGTTTGGATTTCGCGAAGGGGAAGGAAGAAACGCCGAAAAAGCAATGTTGCGACGCAGCAACGTCCATAAAGGAGAGCAACCCAGAGTGCCTCTGCTACATCATTGAAGAGACCCACAAGGGTAGCCCACAGGTTAAAAGCTTGGGCATTCAAGAGGCCAAGCTGCTTCAGCTCCCTTCTGTTTGTAACGTCAAAAACGCCAGCATCACCAACTGTCCTAAGCTTTTGGGTCTATCTCCAAGTTCCCCTGATGCTGCTATCTTCACATCAAATTCTTCGAAGACAACTCCTTCTGCACCTGCAACCTCAAACTCACAAACTACGACCCCCCAGAGCCAAAACGCATCGTATGGAAGCATGGTTCAACCCAGTAGTACCGTTACCTATGCGATTGTGATGGCTTTGGCCATTGTTCTAATTGCTCTTCCAACCGAAATTGTGAGCATTTACACATGA 582 0.4897 MKQQRVEFMGLGLLVVMMACGSASGADDLATKCSAVIQKVIPCLDFAKGKEETPKKQCCDAATSIKESNPECLCYIIEETHKGSPQVKSLGIQEAKLLQLPSVCNVKNASITNCPKLLGLSPSSPDAAIFTSNSSKTTPSAPATSNSQTTTPQSQNASYGSMVQPSSTVTYAIVMALAIVLIALPTEIVSIYT* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1571 193 SMART aai_6 33 114 IPR016140 -
Gso13g1571 193 PANTHER NON-SPECIFIC LIPID TRANSFER PROTEIN GPI-ANCHORED 1 13 186 - -
Gso13g1571 193 Pfam Probable lipid transfer 17 114 IPR016140 -
Gso13g1571 193 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 31 114 IPR036312 -
Gso13g1571 193 MobiDBLite consensus disorder prediction 129 160 - -
Gso13g1571 193 CDD AAI_LTSS 42 106 - -
Gso13g1571 193 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 13 186 IPR043325 -
Gso13g1571 193 Gene3D - 30 111 IPR036312 -
Gso13g1571 193 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1571 Gso-Chr13 31026541 31029722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1571 32 188 Acyl Lipid Metabolism Gene Families AT1G27950 45.860 2.26e-46 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1571 - - gmx:100499777 321.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0050 18 448174 450351 Gso13g1571 13 31026541 31029722 GST
Gso13g1571 13 31026541 31029722 Gso5g1256 5 36123167 36125786 PCT
Gso5g1256 5 36123167 36125786 Gso13g1571 13 31026541 31029722 PCT