Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1562 ATGCAAACTAAGAAAAAAACCTCCAGGCGAAATGCCAGTCAAGAGCGTGCCAGTCCTAAAGTTTCAAGAGCACAGAGGAAGGTCTCTCAAAATGGTCAAGCTGCTGAAAAGAAAGTCACAGACTTAATTACATCATCTGCTAGAAAGAATAAATCTCTTAGCACCCTTGAGAATAAAACTAGAGAGCCTATCCCTCCAACAGATTTGAATAATGGATATGAGTTTATGGACAGTGGGACTTCTGATGCTTGTTTGGAAAATGATGCAGTTGACGGTGTTTCATTAGATTTTATGGGTTGTAACAATCAAGCTGTTCATCTGGAGTCTGGAACTATATTTTCTCCTGGGTTTCACTTGTCCAAAAATTCTGGTGGAGTTGACAGAGTTGATTTTATCAAAATTTTTCAGAATGAAGACCACAAGAGAGTTTCTCCGTGCCAAGAAATAGAGTCACCACAGGAAGATGCAGTAGATGGTCATGTTAGTCGAGACTCTGACACTGCAATGGAGGTAGACATAAACAATTCATCTTTAAGCACAAAAAATGTGAATGGTTGCAATTCTGATTATGATGGAAATGGTCTTTCCATGGAAGTTTCTGCCATATATCTTGCCATGAAAAACTCAAAGCTTGAATGTGTTGATGAGCACAGTCAGGATCCCATGTCTTCTGAAATGTGCATAGAGGAGGATGAATTTGAGGATTTTGATGACTTTGACCCGTACTTATTCATAAAGACCTTGCCAGACTTGTCAACAGTGGTTCCAACTTTTAGACGATTGTTGTTACCGAAGCAGACACGTAGTTGCCCTTCTACTACTCTTGTCCTGGACTTGGATGAAACTTTGGTGCATTCTACCCTGGAACCTTGTGAGGATGTAGACTTCACTTTTCCTGTTAATTTCAATAGTGAGGAGCACATTGTCTATGTACGCTGCCGCCCTCACCTCAAAGATTTCCTTGAGAGAGTTTCTGGTCTTTTTGAGATTATTATATTTACAGCTAGTCAAAGTATTTATGCCGAGCAACTTCTAAATGTGCTTGATCCAAAGCGGAAGATATTTCGCCACCGTGTATACCGTGAGTCCTGTGTTTACGTGGAGGGGAATTACCTCAAAGATTTAACAGTGCTTGGTCGTGATTTGGCACATGTTATGATAATTGACAATTCCCCACAGGCATTTGGATTCCAAGTGGATAACGGAATACCAATCGAGAGTTGGTTTGATGATCGTTCAGATCAAGAATTGCTTTTATTACTTCCGTTCTTGGAGAGCTTGGTTGGTGTTGATGATGTCCGGCCACTAATTGCAAAGAAATTCAACCTGCGGGAGAAAATTGCTGCAGCTGCGCATCCTCTAAATAGAAGAGATTTCTTATCAGAATGA 1389 0.4053 MQTKKKTSRRNASQERASPKVSRAQRKVSQNGQAAEKKVTDLITSSARKNKSLSTLENKTREPIPPTDLNNGYEFMDSGTSDACLENDAVDGVSLDFMGCNNQAVHLESGTIFSPGFHLSKNSGGVDRVDFIKIFQNEDHKRVSPCQEIESPQEDAVDGHVSRDSDTAMEVDINNSSLSTKNVNGCNSDYDGNGLSMEVSAIYLAMKNSKLECVDEHSQDPMSSEMCIEEDEFEDFDDFDPYLFIKTLPDLSTVVPTFRRLLLPKQTRSCPSTTLVLDLDETLVHSTLEPCEDVDFTFPVNFNSEEHIVYVRCRPHLKDFLERVSGLFEIIIFTASQSIYAEQLLNVLDPKRKIFRHRVYRESCVYVEGNYLKDLTVLGRDLAHVMIIDNSPQAFGFQVDNGIPIESWFDDRSDQELLLLLPFLESLVGVDDVRPLIAKKFNLREKIAAAAHPLNRRDFLSE* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1562 462 TIGRFAM HIF-SF_euk: dullard-like phosphatase domain 273 436 IPR011948 GO:0016791
Gso13g1562 462 Gene3D - 258 442 IPR023214 -
Gso13g1562 462 CDD HAD_FCP1-like 274 405 - -
Gso13g1562 462 Pfam NLI interacting factor-like phosphatase 274 434 IPR004274 -
Gso13g1562 462 SUPERFAMILY HAD-like 262 438 IPR036412 -
Gso13g1562 462 SMART forpap2 271 415 IPR004274 -
Gso13g1562 462 MobiDBLite consensus disorder prediction 14 65 - -
Gso13g1562 462 MobiDBLite consensus disorder prediction 1 71 - -
Gso13g1562 462 PANTHER NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED 1 450 - -
Gso13g1562 462 ProSiteProfiles FCP1 homology domain profile. 268 427 IPR004274 -
Gso13g1562 462 PANTHER INTERACTING FACTOR, PUTATIVE, EXPRESSED-RELATED 1 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1562 Gso-Chr13 30957620 30962124 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1562 K17616 K12778 gmx:100798665 895.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0059 18 511814 516409 Gso13g1562 13 30957620 30962124 GST