Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1553 ATGCCTGGTTTTACTGTTGGAAAGAAGAGATTTATCCAGCCAAATATGTGTTTCACCAATTTGATCAATCAAGATAAATCAACTCTTTCACAAAACAATCATTGTTTATTCCCTGAGGCACTGAATAAAGATTATAGCCCCATTCTACCTGGGCTGCCTGATGATGTGGCTGAGTATTGTCTTGCACTCGTGCCTCGTTCCAACTTCCCTGCTATGGGTGGTGTTTGTAAGATATGGAGGTCGTTTATTCAAAGCAAAGAATTTGCTACTGTGCGAAAATTGGCTGGGATGCTTGAGGAATGGCTGTATTTCTTAACAACGGACTGTGAAGGAAAGGAAAGTTATTGGGAGGTTATGGATTGTCTTGGTCATAAATGCCGATCGCTTCCACCAATGCCTGGTCCAGGAAAGGCTGGGTTCCAAGTGGTGGTTCTTAATGGAAAGCTTCTTGTCATGGCTGGTTATTCAGTTATTGAAGGAACTGCCTTTGCCTCAGCAGAGGTTTACCAATATGATTCTTGCCTCAACAGCTGGAGCAGATTGTCAGACATGAATGTGTCTCGTTATGACTTCGCTTGTGCTGAAGTCAATGGTTTGGTTTATGCTGTGGGAGGCTATGGGGTGAATGGTGACAGTCTCTCCAGTGCTGAGGTGTATGATCCAGATACCGACAAGTGGGCACTGATAGAGAGCCTTCGCCGCCCAAGATGGGGTTGTTTTGCTTGTGGATTTGAGGGTAAGCTCTATGTGATGGGTGGAAGGTCAAGCTTTACTATTGGAAACTCCAAGTTTGTTGATATATATAACCCCGAGAGACATAGCTGGTGTGAGATTAAGAATGGTTGTGTTATGGTCACTGCTCATGCAGTATTAGGAAAGAAGTTGTTCTGCATAGAGTGGAAGAACCAACGGAAGCTAGCTATATTCAGTCCAGAGGACAATTCATGGAAAATGGTACCAGTTCCATTGACAGGAAGCTCAAGTATTGGTTTTCGATTTGGGATACTAGATGGTAAGTTGTTGCTATTCCCTCTGGAAGCTGAAACTGCTTTTCAGACATTGTTGTATGATCCAAATGCATCTCTGGGGTCAGAGTGGCAGACTTGTGACATAAGGCCATCTGGTTTGTGCTTATGTTGTGTAACAATCAAGGCATGA 1158 0.4361 MPGFTVGKKRFIQPNMCFTNLINQDKSTLSQNNHCLFPEALNKDYSPILPGLPDDVAEYCLALVPRSNFPAMGGVCKIWRSFIQSKEFATVRKLAGMLEEWLYFLTTDCEGKESYWEVMDCLGHKCRSLPPMPGPGKAGFQVVVLNGKLLVMAGYSVIEGTAFASAEVYQYDSCLNSWSRLSDMNVSRYDFACAEVNGLVYAVGGYGVNGDSLSSAEVYDPDTDKWALIESLRRPRWGCFACGFEGKLYVMGGRSSFTIGNSKFVDIYNPERHSWCEIKNGCVMVTAHAVLGKKLFCIEWKNQRKLAIFSPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFPLEAETAFQTLLYDPNASLGSEWQTCDIRPSGLCLCCVTIKA* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1553 385 Pfam Kelch motif 236 279 IPR011498 GO:0005515
Gso13g1553 385 Pfam F-box domain 51 88 IPR001810 GO:0005515
Gso13g1553 385 SUPERFAMILY F-box domain 46 89 IPR036047 GO:0005515
Gso13g1553 385 Gene3D - 86 382 IPR015915 GO:0005515
Gso13g1553 385 PANTHER KELCH REPEAT F-BOX PROTEIN 1 385 - -
Gso13g1553 385 Pfam Kelch motif 187 232 IPR006652 GO:0005515
Gso13g1553 385 Pfam Kelch motif 138 185 IPR006652 GO:0005515
Gso13g1553 385 PANTHER OS02G0202900 PROTEIN 1 385 IPR045887 -
Gso13g1553 385 SMART kelc_smart 148 198 IPR006652 GO:0005515
Gso13g1553 385 SMART kelc_smart 199 246 IPR006652 GO:0005515
Gso13g1553 385 SMART kelc_smart 247 293 IPR006652 GO:0005515
Gso13g1553 385 SUPERFAMILY Kelch motif 99 343 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1553 Gso-Chr13 30908283 30911504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1553 52 230 Miscellaneous Gene Families AT4G33900 26.667 7.78e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1553 - - gmx:100802912 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0068 18 583927 586960 Gso13g1553 13 30908283 30911504 GST
Gso13g1553 13 30908283 30911504 Gso8g0861 8 7992832 7996755 PCT
Gso8g0861 8 7992832 7996755 Gso13g1553 13 30908283 30911504 PCT