Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1255 ATGGCCAAACACTTTCTTCTGCTTCTTTTTGCAGTATGCGTTGTTGCTATTGATGAAGAACCATTTATAGGGGTGAATATTGGAAGAGACCTCTCAGATATGCCTCACCCCACTCAAGTAGTAGCACTACTTAAAGCACAGCAAATTCGACATGTTAGGTTGTATGATGCTGACCAAGCTATGCTCATTGCCCTTGCAAACACAAGAATTCAAGTTGCTGTATCTGTCCCTAATCAAGAGATCCTAGCAATTGGTCAATCAAATACCACAGCAGCAAAATGGGTTTCCCATAATGTGATAGCACATTACCCTGCCACTAATATAACAACTATTTGTGTTGGTTCTGAGGTCTTAACTACCCTCCCCTATGCAGCGAAAGTGCTTGTCAGTGCCCTTAAGTTCCTTCACTCAGCACTTGTTGCTTCCAATCTTGATCACCAAATCAAAGTCTCAACACCCCTTTCCTCCTCCATGATCCTTGATTCATTCCCACCTTCACAAGCCTTCTTCAACCGCTCGCTGAATCCGGTCTTGGTTCCAATGCTTGATTTCTTGCAAACCACTGACTCTTATCTCATGCTCAACATCTACCCTTACTATGACTACATGCAGTCAAATGGTGTGATTCCATTGGACTATGCACTCTTCAAACCACTCCCTCCAAACAAAGAAGCCATTGATTCTAACACCCTTCTCCACTACTCCAATGTGTTTGATGCTGTGATTGATGCAGCATACTTTGCCATGGCTTTTCTTAATTACACTAACATTCCTGTGGTGGTGACAGAAACAGGTTGGCCATCAAAAGGTGACTCCAATGAACCTGATGCAACAGTGGAAAATGCAAACACTTACAACAGCAACTTGATCAAGCATGTGCTTAACATAACCGGAACTCCAAAACACCCCGGAATTGGTGTTAGTACTTTCATCTATGAGCTCTACAATGAGGATGCAAAGGCAGGACCATTGTCAGAGAAAAACTGGGGCTTATTTGATGCAAATGGAAAACCTGTTTATGTTTTGCACTTGACAGAATCAGGAGGAGTGTTGGCAAATGACACCACCAATCAAACTTACTGTGTTGCTAAGGATGGTGCTGATCCTAAGATGCTGCAGGCTGGAATAGATTGGGCTTGTGGACCTGGCAAGGTGGATTGCTCTCCTTTGCTGCAAGGACAACCATGTTATGAACCAGACAATGTGGTTGCACATGCAAATTATGCTTTTGACACTTACTATCATCAGATGGGAAAGTCTACTCAGTCTTGTGATTTCAATGACATGGCTACAATCTCCACCACCAATCCAAGTCATGGATCCTGTGTATTTCCAGGAAGTCTTGGAATCAATGGCAGCTTCCCCAACGTCACGTTATCATCACTGAATTCCACAAATTCAGTTTCTTCTGCCTCCAATCTCCATAGTGGTGAATTGGGAATTAGAAGCCTTCTAATGGTGATAGTACTTCTACTATGGGGAGTGGTTTTGCTATAA 1497 0.4295 MAKHFLLLLFAVCVVAIDEEPFIGVNIGRDLSDMPHPTQVVALLKAQQIRHVRLYDADQAMLIALANTRIQVAVSVPNQEILAIGQSNTTAAKWVSHNVIAHYPATNITTICVGSEVLTTLPYAAKVLVSALKFLHSALVASNLDHQIKVSTPLSSSMILDSFPPSQAFFNRSLNPVLVPMLDFLQTTDSYLMLNIYPYYDYMQSNGVIPLDYALFKPLPPNKEAIDSNTLLHYSNVFDAVIDAAYFAMAFLNYTNIPVVVTETGWPSKGDSNEPDATVENANTYNSNLIKHVLNITGTPKHPGIGVSTFIYELYNEDAKAGPLSEKNWGLFDANGKPVYVLHLTESGGVLANDTTNQTYCVAKDGADPKMLQAGIDWACGPGKVDCSPLLQGQPCYEPDNVVAHANYAFDTYYHQMGKSTQSCDFNDMATISTTNPSHGSCVFPGSLGINGSFPNVTLSSLNSTNSVSSASNLHSGELGIRSLLMVIVLLLWGVVLL* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1255 498 Gene3D Glycosidases 22 349 - -
Gso13g1255 498 ProSitePatterns Glycosyl hydrolases family 17 signature. 257 270 IPR000490 GO:0004553|GO:0005975
Gso13g1255 498 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 6 479 IPR044965 GO:0004553|GO:0005975
Gso13g1255 498 SUPERFAMILY (Trans)glycosidases 23 343 IPR017853 -
Gso13g1255 498 SMART X8_cls 359 444 IPR012946 -
Gso13g1255 498 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 2 6 479 - -
Gso13g1255 498 Pfam Glycosyl hydrolases family 17 23 342 IPR000490 GO:0004553|GO:0005975
Gso13g1255 498 Pfam X8 domain 360 431 IPR012946 -
Gso13g1255 498 Gene3D - 353 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1255 Gso-Chr13 27802578 27806613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1255 18 490 Glycoside Hydrolase AT1G66250 72.211 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1255 K19891 - gmx:100804152 951.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0358 18 3424177 3428079 Gso13g1255 13 27802578 27806613 GST
Gso13g1255 13 27802578 27806613 Gso14g1807 14 50425448 50428534 PCT
Gso13g1255 13 27802578 27806613 Gso2g2086 2 45466239 45469288 PCT