Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0148 ATGAAAGGAATAATAGCATTGCACACGCTTTTGCCATTTCTTCTATTTTCTGCCATTTTACCACTCCCTTTCTCAGCTCAACCCCGCAACGCCAAGAAGCCCAAAACCCCATATTCTGATAATAATCATCATCGCCTTTCCTCCTCTGCTGTTTTCAAACTTCAGGGAAATGTGTACCCTCTTGGGCATTACACAGTGTCTCTCAACATTGGCTATCCCCCCAAGCTTTATGACCTTGACATTGACTCGGGTAGTGACCTTACTTGGGTTCAGTGTGATGCACCATGTAAAGGTTGCACCAAGCCTCGCGATCAACTTTATAAACCCAATCACAACCTTGTGCAATGTGTGGACCAGTTGTGTTCTGAAGTGCACTTATCAATGGCCTATAATTGTCCTTCCCCAGATGACCCATGTGACTATGAGGTTGAGTATGCAGATCATGGATCATCTCTGGGTGTGCTAGTCCGGGATTACATTCCTTTTCAATTCACCAATGGCTCTGTGGTGCGCCCTAGGGTAGCCTTTGGGTGCGGATATGATCAAAAGTATTCTGGTTCTAACTCCCCACCTGCTACGTCAGGAGTCCTTGGCCTTGGGAATGGCAGAGCAAGCATTTTGTCTCAGCTTCATTCTTTGGGTCTGATCCGCAATGTTGTTGGCCACTGCCTAAGTGCACAAGGAGGAGGGTTTTTATTCTTCGGAGATGATTTCATTCCCTCTTCAGGAATTGTTTGGACATCCATGTTGTCGAGTTCTTCGGAAAAACACTACAGCTCAGGACCAGCAGAACTGGTTTTCAATGGAAAGGCTACTGCTGTTAAGGGTCTTGAACTTATCTTCGATAGTGGGAGCTCTTACACATACTTCAACTCACAAGCCTATCAAGCTGTTGTTGATTTAGTAACTAAAGATTTAAAGGGAAAACAGTTGAAAAGAGCAACTGATGACCCATCACTTCCAATTTGTTGGAAGGGTGCAAAGTCTTTCGAATCGTTAAGTGATGTCAAGAAATATTTCAAGCCCCTAGCATTGAGCTTCAAAAAAATCATGAATTTGCAGATGCACCTACCACCAGAATCTTACCTTATTATCACTAAACATGGCAATGTCTGCTTGGGGATTCTAGATGGCACTGAAGTAGGACTAGAAAATCTGAACATAATAGGAGACATCACTTTACAAGATAAAATGGTGATTTATGACAACGAGAAACAGCAGATTGGATGGGTTTCTTCAAATTGTGATAGGCTTCCCAATGTGGATCGTGATTTGGAAGGTGATTTTCCACACCCATATGCAACAAATTTGGGTATCTTTGGGGACCGTTGCCCTGCATCATATGAAGAAACAGGCTGTGAATGA 1365 0.4337 MKGIIALHTLLPFLLFSAILPLPFSAQPRNAKKPKTPYSDNNHHRLSSSAVFKLQGNVYPLGHYTVSLNIGYPPKLYDLDIDSGSDLTWVQCDAPCKGCTKPRDQLYKPNHNLVQCVDQLCSEVHLSMAYNCPSPDDPCDYEVEYADHGSSLGVLVRDYIPFQFTNGSVVRPRVAFGCGYDQKYSGSNSPPATSGVLGLGNGRASILSQLHSLGLIRNVVGHCLSAQGGGFLFFGDDFIPSSGIVWTSMLSSSSEKHYSSGPAELVFNGKATAVKGLELIFDSGSSYTYFNSQAYQAVVDLVTKDLKGKQLKRATDDPSLPICWKGAKSFESLSDVKKYFKPLALSFKKIMNLQMHLPPESYLIITKHGNVCLGILDGTEVGLENLNIIGDITLQDKMVIYDNEKQQIGWVSSNCDRLPNVDRDLEGDFPHPYATNLGIFGDRCPASYEETGCE* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0148 454 CDD nucellin_like 62 415 IPR033823 GO:0004190
Gso13g0148 454 Gene3D Acid Proteases 38 236 IPR021109 -
Gso13g0148 454 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 2 418 - -
Gso13g0148 454 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 279 290 IPR001969 GO:0004190|GO:0006508
Gso13g0148 454 Gene3D Acid Proteases 240 419 IPR021109 -
Gso13g0148 454 PANTHER ASPARTYL PROTEASES 2 418 IPR001461 GO:0004190|GO:0006508
Gso13g0148 454 ProSiteProfiles Peptidase family A1 domain profile. 64 411 IPR033121 -
Gso13g0148 454 SUPERFAMILY Acid proteases 56 420 IPR021109 -
Gso13g0148 454 Pfam Xylanase inhibitor C-terminal 278 410 IPR032799 -
Gso13g0148 454 PRINTS Pepsin (A1) aspartic protease family signature 70 90 IPR001461 GO:0004190|GO:0006508
Gso13g0148 454 PRINTS Pepsin (A1) aspartic protease family signature 279 290 IPR001461 GO:0004190|GO:0006508
Gso13g0148 454 PRINTS Pepsin (A1) aspartic protease family signature 387 402 IPR001461 GO:0004190|GO:0006508
Gso13g0148 454 Pfam Xylanase inhibitor N-terminal 64 236 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0148 Gso-Chr13 9994519 9998405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0148 27 419 Miscellaneous Gene Families AT1G77480 58.376 1.26e-169 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0148 - - gmx:100796332 934.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1204 14 28199878 28203451 Gso13g0148 13 9994519 9998405 GST
Gso13g0148 13 9994519 9998405 Gso4g1754 4 47657863 47661951 PCT
Gso13g0148 13 9994519 9998405 Gso6g0970 6 9333593 9336749 PCT