Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1813 ATGCAGCTGCACATATCTCCAAGTTTGAGGCATGTTACTGTGTTTCCAAGCAAAGGGTTCAAGGAGTTTATCAAAGTGAAGGTTGCATCGAGGCGTGTCTCGTACCGGATGCTCTTCTATTCGCTCTTGTTCTTCACTTTTCTTCTCCGGTTTGTGTTTGTTTTAACAGCAGTGGATGGCATTGATGGAGAAAACAAATGCACTACCATAGGTTGCCTAGGGAAAAAACTAGGACCAAGGATTTTGGGAAGACGGCCTGAATCAACTGTCCTAGAAGTGATATACCAAACATTAGATGAACCTGTTGGTAAAAATGAACTTCAGGGAAGATCTGATATTCCACAGACCTTAGAAGAGTTCATGACTGAAATGAAGAAAGGTGGATATGATGCCAAGACATTTGCAGTTAAACTTCGAGAAATGGTAACCCTTATGGAGCAAAGGACCAGGATGGCCAAAATCCAAGAATATCTATATCGACATGTAGCATCAAGCAGCATACCAAAACAACTTCACTGCCTTTCCTTGACTTTGGCCAATGAACACACCAACAACGCAGCGGCACGCCTTCAGCTCCCCTCTGCAGAACTAGTCCCTGCTCTGGTTGACAATTCCTACTTCCACTTTGTCCTTGCCTCAGACAATGTGTTGGCTGCATCAGTGGTTGCAGCATCGCTTGTTCGCAACTTTTTGAGACCTCAGAAGGTTGTTCTGCATATAATTACAGACAAGAAGACTTATTATCCCATGCAGGCTTGGTTCTCATTGCATTCTTTGTCACCTGCTATAATTGAGGTCAAGGCATTGCACCATTTTGATTGGTTTACAAAGGGAAAGGTACCTGTTTTGGAAGCTATGGAGAAAGATCAAAAGGTGAGGTCACAATTTAGAGGGGGGTCATCAGCTATAGTTGCAAATACCACTGAGAAGCCAAAAGTAATTGCAGCAAAACTGCAAGCACTTAGTCCCAAGTATAATTCAGTGATGAACCACATCCGGATACATCTCCCAGAGTTGTTTCCAAGTATTAACAAGGTGGTCTTCCTTGATGATGACATCGTGGTACAAACTGATCTTTCACCTTTGTGGGACATTGAAATGAATGGAAAAGTAAATGGAGCTGTAGAAACATGCAATGGAGAAGATAAGTTTGTGATGTCAAAGAGGCTGAAGAGCTATTTGAACTTCTCCCACCCTCTAATATCCAAAATTTTTAATCCCAACGAATGTGCCTGGGCCTATGGCATGAACATTTTTGATTTGGAGGCTTGGAGGAAGACCAATATAAGCAATGTTTACCATTATTGGGTTGAACAGAATATCAAATCAGACCTGAGTTTGTGGCAGCTAGGGACATTACCTCCTGGATTGATAGCATTTCATGGTTATGTCCACGTTATTGATCCTTTCTGGCATATGCTGGGATTGGGATATCAGGAAAATACAAGTTTTGCTGATGCTGAGAGTGCTGGTGTCATCCATTTCAATGGCAGGGCAAAGCCATGGTTAGAAATAGCTTTTCCACAACTAAGGAAATTGTGGACAAAGTATGTTGACTTCTCAGATAAGTTCATCAAGAGTTGTCACATTAGGGCATCATAG 1602 0.4207 MQLHISPSLRHVTVFPSKGFKEFIKVKVASRRVSYRMLFYSLLFFTFLLRFVFVLTAVDGIDGENKCTTIGCLGKKLGPRILGRRPESTVLEVIYQTLDEPVGKNELQGRSDIPQTLEEFMTEMKKGGYDAKTFAVKLREMVTLMEQRTRMAKIQEYLYRHVASSSIPKQLHCLSLTLANEHTNNAAARLQLPSAELVPALVDNSYFHFVLASDNVLAASVVAASLVRNFLRPQKVVLHIITDKKTYYPMQAWFSLHSLSPAIIEVKALHHFDWFTKGKVPVLEAMEKDQKVRSQFRGGSSAIVANTTEKPKVIAAKLQALSPKYNSVMNHIRIHLPELFPSINKVVFLDDDIVVQTDLSPLWDIEMNGKVNGAVETCNGEDKFVMSKRLKSYLNFSHPLISKIFNPNECAWAYGMNIFDLEAWRKTNISNVYHYWVEQNIKSDLSLWQLGTLPPGLIAFHGYVHVIDPFWHMLGLGYQENTSFADAESAGVIHFNGRAKPWLEIAFPQLRKLWTKYVDFSDKFIKSCHIRAS* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1813 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 208 530 IPR029044 -
Gso12g1813 533 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 12 531 IPR029993 GO:0047262
Gso12g1813 533 PANTHER GALACTURONOSYLTRANSFERASE 12-RELATED 12 531 - -
Gso12g1813 533 CDD GT8_like_1 207 519 - -
Gso12g1813 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 209 527 IPR029044 -
Gso12g1813 533 Pfam Glycosyl transferase family 8 206 506 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1813 Gso-Chr12 41860139 41863771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1813 1 533 Glycosyltransferase AT5G54690 78.692 0.0 867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1813 K20867 - gmx:100812550 1036.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1813 12 41860139 41863771 Gso11g3050 11 46334714 46338467 GST
Gso12g1813 12 41860139 41863771 Gso12g1129 12 15996540 15999877 PCT
Gso12g1813 12 41860139 41863771 Gso6g2215 6 42792708 42795920 PCT
Gso12g1129 12 15996540 15999877 Gso12g1813 12 41860139 41863771 PCT
Gso6g2215 6 42792708 42795920 Gso12g1813 12 41860139 41863771 PCT