Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1129 ATGTTGCTGCAGATATCTCCGAGTTTGAGGCATGTCACCGTGCTTCCGGGAAAAGGGTTGAAGGAGTTTATCAAAGTGAAGGTTGCATCAAGGAAGCTTTCTTATCGGATGCTCTTCTATTCACTCTTGTTCTTCACATTCCTTCTTAGGTTTGTGTTTGTCTTGACAGCTGTGGATAACATTGATGGAGAAAACAAGTGCTCTTCCTTAGGTTGCCTGGGAAAAAAATTGAGGCCAAAGATTTTGGGAAGAAGTCTAGAATCAAATGTCCCAGAAGTGATATACGGAATATTAGATCAACCCCTTGGCAAAGATGAACTAGAGGGAAGGTCTGATATACCTCAGACATTAGAAGAGTTCATGACCCAAATGAAGGAAGGTGGATATGATGCCAAGACATTTGCAATTAAACTAAGAGAAATGGTAACCCTTATGGAACAAAGAACAAGGGAAGCAATAGTTCAAGAATATTTATATCGTCATGTAGCCTCAAGCGGCATACCCAAACAGCTTCACTGCCTTGCCTTAAGGGTGGCCAACGAGCACACCAACAATGCCGCGGCACGCCTTCAGCTACCCTCTGCAGAACTTGTCCCTGCCCTGGTTGACAACAACTACTTTCACTTTGTCCTGGCCTCAGACAATGTTCTTGCCGCCTCTGTGGTTGCAACATCGCTTGTTCGCAACAGTTTGCGACCTCAGAGGGTTGTTCTGCACATAATTACAGATAGAAAGACTTACTACCCCATGCAGGCTTGGTTCTCCTTGCACCCTTTATCACCTGCCATAATTGAGGTCAAGGCATTGCACCACTTTGATTGGTTTACAAAAGGGAAGGTGCCTGTGCTTGAAGCAATGGAAAAAGATCAAAATGTTCGATCACATTTTAGAGGGGGGTCATCAGCTATCGTTGCAAATACTACTGAGAAGCCGAAAGTAATTGCTGCAAAGCTGCAAGCACTTAGTCCTAAGTATAATTCAGTAATGAATCACATTCGGATACATCTTCCAGAGTTGTTCTCAAGTCTTAACAAGGTGGTCTTCCTCGATGATGACACTGTGGTACAAACTGATCTTTCACCTCTGTGGGACATTGACTTAAATGGAAAAGTTAATGGAGCAGTAGAAACATGCAGTGGAGAAGATAAGTTGGTGATGTCAAAGAGGTTGAAAAGCTATTTGAACTTCTCCCACCCTTTAATATCCCAAAATTTTGATCCCAATGAATGTGCTTGGGCTTATGGCATGAACATTTTTGACCTTGATGCTTGGAGGAAGACCAATATAAGCTCTACATACCATCATTGGGTTGAGCAGAATATAAAATCAGACCTCAGTTTGTGGCAGCTAGGAACATTACCCCCTGGATTAATAGCATTCCATGGTCATGTCCACACTATTGATCCTTTCTGGCACATGTTGGGATTGGGATATCAGGAAAATACAAGTTTTGCTGATGCTGAGACTGCTGGTGTCATCCATTTCAATGGCAGGGCAAAGCCATGGCTAGATATAGCTTTTCCCCATCTAAAGCCATTGTGGACCAAGTACATTGACTTTTCAGATTACTTCATAAAGAGTTGTCACATTAGGGCATTGTAA 1602 0.427 MLLQISPSLRHVTVLPGKGLKEFIKVKVASRKLSYRMLFYSLLFFTFLLRFVFVLTAVDNIDGENKCSSLGCLGKKLRPKILGRSLESNVPEVIYGILDQPLGKDELEGRSDIPQTLEEFMTQMKEGGYDAKTFAIKLREMVTLMEQRTREAIVQEYLYRHVASSGIPKQLHCLALRVANEHTNNAAARLQLPSAELVPALVDNNYFHFVLASDNVLAASVVATSLVRNSLRPQRVVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALHHFDWFTKGKVPVLEAMEKDQNVRSHFRGGSSAIVANTTEKPKVIAAKLQALSPKYNSVMNHIRIHLPELFSSLNKVVFLDDDTVVQTDLSPLWDIDLNGKVNGAVETCSGEDKLVMSKRLKSYLNFSHPLISQNFDPNECAWAYGMNIFDLDAWRKTNISSTYHHWVEQNIKSDLSLWQLGTLPPGLIAFHGHVHTIDPFWHMLGLGYQENTSFADAETAGVIHFNGRAKPWLDIAFPHLKPLWTKYIDFSDYFIKSCHIRAL* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1129 533 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 12 531 IPR029993 GO:0047262
Gso12g1129 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 209 524 IPR029044 -
Gso12g1129 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 208 530 IPR029044 -
Gso12g1129 533 CDD GT8_like_1 207 519 - -
Gso12g1129 533 Pfam Glycosyl transferase family 8 203 506 IPR002495 GO:0016757
Gso12g1129 533 PANTHER GALACTURONOSYLTRANSFERASE 12-RELATED 12 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1129 Gso-Chr12 15996540 15999877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1129 1 532 Glycosyltransferase AT5G54690 79.588 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1129 K20867 - gmx:100783157 1047.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1129 12 15996540 15999877 Gso6g2215 6 42792708 42795920 GST
Gso12g1813 12 41860139 41863771 Gso12g1129 12 15996540 15999877 PCT
Gso11g3050 11 46334714 46338467 Gso12g1129 12 15996540 15999877 PCT
Gso12g1129 12 15996540 15999877 Gso12g1813 12 41860139 41863771 PCT
Gso12g1129 12 15996540 15999877 Gso11g3050 11 46334714 46338467 PCT