Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1811 ATGGAGTCAATACTGGGTCGGGCTCTGGAGTACACTCTCAAGTACTGGCTCAAGTCCTTCTCCCGCGAACAGTTCAAGCTCCAAGGCCGCACCGTTCACCTCTCCAATTTAGATATCGATGGAGACGCCTTGCATTCCAGCGTCGGATTGCCGCCGGCGCTCAACGTCGCCACCGCCAAAGTCGGCAAGCTAGAGATTACACTTCCGTCGGTGAGCAATGTGCAAACGGAGCCAATCGTGGTGCATATTGATAGACTCGATCTGGTTCTCGAGGAGAATTCTGATTCTGATGAATCTCTTAGTTCGAACTGCTCCACGCCGTCGGCTGCCTCCGCCAAGGGAAGTGGTTATGGTTTCGCTGATAAGATTGCAGATGGCATGACTATACAAATTCAAACAGTTAATCTTTTACTTGAAACTCGTGGTGGTTCTCGTCGCCAAGCGGGAGCAACATGGGCTCCACCTATGGCATCTATCACCATACGCAACCTTTTGTTGTATACTACCAATGAAAACTGGCAGGTTGTAAATCTTAAGGAAGCACGGGAATTCTCCAGTCACAAGAAGTATATATATGTCTTCAAAAAACTGGAATGGCAATCTTTGTCTATTGATCTCTTACCTCATCCCGACATGTTCACAGAGGCTGCATTTGGCCACTCTCAAGGGGAATCAAACTTTAGGGATGATGATGGCGCAAAGCGTGTATTCTTTGGAGGAGAGCGTTTTATAGAAGGAGTATCAGGAGAAGCATATATCACAATTCAGAGAACTGAGTTGAATAGTCCACTTGGGCTTGAGGTTCAATTGCACATCAATGAAGCTGTTTGCCCTGCAGTAAGCGAACCAGGATTACGTGCACTTCTCCGCTTTATGACAGGAGTATATGTTTGTCTAAACAGGGGTGATCTTGATTCCAAGATTCATCAGCGATCCACTGAAGCAGCTGGGCGTTCTCTTGTCTCAATTGTCGTAGATCATATATTTCTTTGTATTAAAGATACTGAATTCCAGCTTGAGCTTTTGATGCAGTCCCTCTGCTTTTCTCGGGCCAGTCTCTCTGAAGGAGATAATGATAATAACTTGACCAGAATTACAATTGGTGGCTTATTTTTAAGGGACACCTTCTGTAGCCCTCCATGTATCTTAGTGCAACCATCAATGCAAGTTGTCACAAGAGATGCTTTCCATGTGCCAGAATTTGCCAGAAGCTTTTGCCCTCCAATATATCCTTTGCAAGAACAGGAGTGGCAATTGATCGAGGGAACCCCTCTAATATGCCTCCATGCTCTTAAGATCATGCCTTCTCCACTTCCACCATCCTTTGCTTCTGAAACTGTTATTGACTGTCAGCCTCTTGTGATTCATCTCCAGGAAGAATCATGCCTGAGGATATCCTCTTTATTAGCTGATGGAATTGTTGTCAATCCTGGTGACATTTTACCAGATTTCTCAGTGAAATCTTTTATTTTCAATCTAAAAGGACTGGATCTTACAGTTCCTTTTGACAAGACCAAATTGGATATTTCCAAAAGTGACATGGACAATACAGTCCAGACCTCCTTTGCTGGAGCAAGGCTTCATATTGAAAGCCTTTGTTTTTTAAATTCACCCTCACTGAAACTAAGAATTCTGAACCTGGAGAAGGATCCTGCTTGCTTCAGTCTTTGGGAAGGTCAACCAATTGATGCTAGCCAGGAGAAATGGACTGCTAGAGCATCCCAGCTTACTTTATCTCTGGAAGCATGTACTGACAGAACTGGATGTCAAAATTCCCTTAAACAGACATCAGGATTGTGGAGATGTGTTGATCTGAAAGATGCTTGCATTGAAGTAGCTATGGCAACTGCTGATGGCAGTCCATTGTTACAAGTTCCCCCTCCGGGGGGTATTGTTAGGGTTGGAGTTGCTTGCGAACAGTATCTGTCCAACACTTCTGTTGAACAATTGTTTTTCGTCCTGGATCTATATGGTTATTTTGGGAGAGTTAGTGAAAAGATAGCAAAGGCCGTAAAAAGGAAACAATTGGAGGACATTAGGGACAAATCTTTTAGTGGAAAGCTGATGGACAAGGTTCCTAGTGATGCTGCTGTGAGTTTATCAGTGAAAAACCTCCAACTTCGATTTCTGGAGTCATCTTCTGTGAATATTGAGGGGATGCCTTTAGTGCAATTTGTTGGAGATGATCTGTTTACTAGTGCCACTCACAGAACCCTTGGTGGGGCTATTATTGTTTCATCTTTTTTACGTTGGGGGAGTGTTGTGATAGGTTGTGTAGATGATGAGGGGCACTTGCCGTGTGAAAATGGCTCATTCTTGAGTTCTAAGGAAAATGCTCTCTCATTGAGTGATAATGGATATCCTCAACTAAGAACTGTTTTCTGGGTGCATAAGAACGAGAAACATCTATTGAATGGAAATGCTTATTCAGTCCCTTTTCTGGACATAAGCATGGAGCATGTCATACCATTATATGAACAAGACTTGGAGTCTCATAGTTTGAATGTCTCAGCTTCTGTATCTGGTGTTCGTCTTGCTGGAGGAATGAACTATGCTGAAGCCCTCCTGCATAGATTTGGAATACTTGGGCCTGATGGAGCTCCTGGGACGGGTCTTTGTAAAGGGTTGGAAAACTTACAAAAAGGACCATTGTCAAAACTTTTTAAGGCAACTCCTCTCATTGTTGATAATTCAGAAGATGTTGGAAGTATGAGAGAAGGGAAAGAAATCAGTTTTCCTCAATTGAAGAAGCCTGATGATGTGGATGTAACTATAGAATTGAGAGACTGGTTATTTGCCCTTGAAGATGCACAAGAGACAGCTGAAAGATGGTGGTTCTCAAGCCATGTAGATGAAGGCAGAGAAGAGAGGAGTTGGCATGCATCTTTCCATGGTTTGCGAGTAAATGCAAAAAGTAGCCCAACGGATGTTCCAGGTGGAAAAGGACAATTGCGAAGAATAAAACAACATCCAGTAGAATTGATTACAGTTGGAATTCAAGGTCTGCAAATCTTGAAGCCACATTTGCAAAAAGACATTCCTTCATCAACGCTAATTGCAAATGGGGGTAAAGGATTCACCAACACAGTTGGAGGAATTGGTGTTGAAGTTCGCTTGATATTAGGTGGGGAGAATGTCGATGATGAAATGGTCAATTGGGAAGTGGAAAACCTAAAATTCTCTGTTAAACAACCGATTGAGGCAGTTGTAACCAAGGATGAGGTTCAGCACCTCACTTTTCTGTGCAAATCTGAAATTGACTCAATTGGCCGGATAACTGCTGGAATTATACGGTTGCTGAAGTTAGAAGGTTCTGTTGGTCAGTCTGTAATAGACCAACTCGGCCACCTAGGAAGTGAAGGCATTGATAAGATTTTCTCTTCTGAAAAGTACAGTAGAGACGGAAGTGTTGGTAGTAGAGGACTTTCTCCATTGCCAAATCTCATCATAAATGAGGAATCACACAAAACTTCAGAACAAACATTGACTTTGCTTGAGGAAGCACTTACGGATTCACAGGCTAAACTTAATGATTTAATCAGTGATATTGGTACTTCAGAGTCTTCCTCTCAACACCTTACCATCGTCCAACTCAGTCAAAATATAGAGACTATGCACGACTTGTTGATGCAATTACGGAATCAAATTTGA 3651 0.4276 MESILGRALEYTLKYWLKSFSREQFKLQGRTVHLSNLDIDGDALHSSVGLPPALNVATAKVGKLEITLPSVSNVQTEPIVVHIDRLDLVLEENSDSDESLSSNCSTPSAASAKGSGYGFADKIADGMTIQIQTVNLLLETRGGSRRQAGATWAPPMASITIRNLLLYTTNENWQVVNLKEAREFSSHKKYIYVFKKLEWQSLSIDLLPHPDMFTEAAFGHSQGESNFRDDDGAKRVFFGGERFIEGVSGEAYITIQRTELNSPLGLEVQLHINEAVCPAVSEPGLRALLRFMTGVYVCLNRGDLDSKIHQRSTEAAGRSLVSIVVDHIFLCIKDTEFQLELLMQSLCFSRASLSEGDNDNNLTRITIGGLFLRDTFCSPPCILVQPSMQVVTRDAFHVPEFARSFCPPIYPLQEQEWQLIEGTPLICLHALKIMPSPLPPSFASETVIDCQPLVIHLQEESCLRISSLLADGIVVNPGDILPDFSVKSFIFNLKGLDLTVPFDKTKLDISKSDMDNTVQTSFAGARLHIESLCFLNSPSLKLRILNLEKDPACFSLWEGQPIDASQEKWTARASQLTLSLEACTDRTGCQNSLKQTSGLWRCVDLKDACIEVAMATADGSPLLQVPPPGGIVRVGVACEQYLSNTSVEQLFFVLDLYGYFGRVSEKIAKAVKRKQLEDIRDKSFSGKLMDKVPSDAAVSLSVKNLQLRFLESSSVNIEGMPLVQFVGDDLFTSATHRTLGGAIIVSSFLRWGSVVIGCVDDEGHLPCENGSFLSSKENALSLSDNGYPQLRTVFWVHKNEKHLLNGNAYSVPFLDISMEHVIPLYEQDLESHSLNVSASVSGVRLAGGMNYAEALLHRFGILGPDGAPGTGLCKGLENLQKGPLSKLFKATPLIVDNSEDVGSMREGKEISFPQLKKPDDVDVTIELRDWLFALEDAQETAERWWFSSHVDEGREERSWHASFHGLRVNAKSSPTDVPGGKGQLRRIKQHPVELITVGIQGLQILKPHLQKDIPSSTLIANGGKGFTNTVGGIGVEVRLILGGENVDDEMVNWEVENLKFSVKQPIEAVVTKDEVQHLTFLCKSEIDSIGRITAGIIRLLKLEGSVGQSVIDQLGHLGSEGIDKIFSSEKYSRDGSVGSRGLSPLPNLIINEESHKTSEQTLTLLEEALTDSQAKLNDLISDIGTSESSSQHLTIVQLSQNIETMHDLLMQLRNQI* 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1811 1216 Coils Coil 1162 1182 - -
Gso12g1811 1216 Coils Coil 1195 1215 - -
Gso12g1811 1216 Pfam N-terminal region of Chorein or VPS13 1 99 IPR026854 -
Gso12g1811 1216 PANTHER AMINO-TERMINAL REGION OF CHOREIN, A TM VESICLE-MEDIATED SORTER 1 1215 - -
Gso12g1811 1216 PANTHER UNCHARACTERIZED 1 1215 IPR026728 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1811 Gso-Chr12 41816022 41824401 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1811 - - gmx:100811661 2374.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1811 12 41816022 41824401 Gso11g3052 11 46368816 46377356 GST
Gso12g1811 12 41816022 41824401 Gso12g1127 12 15932658 15955314 PCT
Gso12g1127 12 15932658 15955314 Gso12g1811 12 41816022 41824401 PCT