Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1127 ATGGAGTCGATCCTGGGAAGGGCTCTGGAGTACACTCTCAAGCACTGGCTCAAATCGTTCTCAAGAGACCAGTTCAAGCTGCAGGGTCGCACCGTTCAGCTTTACAATCTAGATTTGAACGGGGATGTACTGCATTCCAGCGTTGGATTCCCGCCCGCGCTCAATGTCACCGCTGCCAAAGTTGGCAAATTGGAGATCACGCTTCCGTCCGTGAGCAATGTACAGATAGAGCCAATCATTGTGCAAATTGATAGGCTCAATTTGGTTCTTGAGGAGAATTTTGATTTTGAGCCATCTGAAACTCAACCCAGTGCCTCCACAAAGGGTAGCGGCTATGGTTTTGCTGATAAGATTGCAGATGGAATGACTATACAAATTGATACTGTTAATCTATTACTTGAAACTCGTGGAAGTGCTAGTCGCCAAGGGGGAGCAACATGGACACCACCTATGGCATCTATCACCATACACAACCTTTTACTGTATACCACAAATGAAAGCTGGGAGGTTGTGAATCTTAAAGAGGCACGGGAATTCTCCAGTAATAAGAAGTATATATACGTCTTCAAAAAACTAGAATGGGAATCTTTGTCTATTGATCTTTTGCCTCATCCTGACATGTTCACGGATGCTACTTTAGGCCGCTCTCAAGAGGGAGCAAACCTGAGAGACGAGGATGGTGCAAAGCGGGTATTGTTTGGAGGTGAGCGTTTTATAGAAGGAATATCAGGAGAAGCATATATAACGATACAGAGAACTGAATTGAACAGTCCATTTGGGCTTGAGGTTCAGTTACATGTCACAGAAGCTGTTTGCCCCGCTTTAAGTGAACCAGGACTGCGTGCGCTTCTCCGCTTTATAACAGGATTATATGTCTGTCTAAATAGGGGAAATGTGGATTTCAAGGCTCAGCAGCGATCAACTGAAGCTGCTGGGCGTTCTCTTGTCTCAATTGTTGTGGACCACATATTTCTTTGCATTAAAGACGCTGAGTTCCAGCTTGAGCTTTTAATGCAGTCCCTCTATTTTTCTCGGGCCAGTCTTTCGGAAGGAGATAGTGACAGTAACCTGACCAGAATTACAGTTGCAGGACTATTTTTAAGGGACACCTTTTCATTTCCTCCATCTACCTTAGTGCAACCATCAATGCAATCTGTTACCGGAGATGCTTTCCAAGTGCCAGCATTTGCTAGAAGTTTTTGCCCTCCAATATATCCTCTAGGAGAACAGCAATGGCTATCAATTGTGGGAACTCCTCTGATATGCCTCCATTCCATTCAGATCGTGCCGTCTCCACTTCCACCATCCTTTGCTTCTCAAACTGTTATTGATTGTCAACCTCTTATGATTCACCTGCAGGAAGAATCCTGCCTGACGATATCATCATTCTTAGCTGATGGTATTGTTGTCAATCCTGGTGACATTTTACCAGATTTCTCAGTAAAATCTTTTATTTTCACTCTCAAGGGGCTGGATCTAACAGTTCCCTTGGATAAGACCCAACTGGATAATTCTGAAACCAATATGGACAATAAAATCAAGACTTCCTTTGCTGGAGCAAGGCTTCATATTGAAAATCTTTTCTTTTTAGATTCACCCTCATTGAAACTGAAAATACTGAACCTCGAGAAGGATCCTGCTTGCTTCTGTCTTTGGGAGGATCAACCTATTGATGCTAGTCAGAAGAAGTGGACTGCTGGAGTATCCCAGCTTACTTTATCTCTGGAAGCAAGTACTGGCAAGCTTGGTCATCAGAATTCTCTTGGATGGACTGCTGGATTGTGGAGGTGTGTTAATCTAAGAGATGCTAGCATAGAAGTAGCTATGGTAACTGCTGATGGAAATCCATTGTTAAAGGTTCCTCCTCCAGGGGGTATTGTGAGGGTTGGTATTGCTTGTGAACAGTATCTATCCAACACTTCAGTTGAACAGTTATTTTTTGTCCTGGATCTCTATGCTTATTTTGGGAGAGTTAGTGAGAAAATAGAAATAGCTGGAAAAAAGAAACAATTGAAGGATGTCAGGAACAAATCTTTTAGTGGAAAGCTGATGGACAAGATACCAAGTGACACATCTGTAACTTTGACATTAAAAAATCTCCAACTTCAATTTCTTGAGCCATCTTCTGTGAATGCTGAGGGAATGCCTCTAGCACAGTTTGTCGGAGATGATCTGTCTTTTAGTGCCACTCACAGAACCCTAGGTGGTGCTATTGTTGTTTCATCCACTTTAAATTGGGAGAGAGTTGTGATAGATTGTGTGGATTCCAAGGAGCCCTTGGCATGTGAAAAGGACTCATATTTTAGTACCGTAGAAAATGTTCCCTCAATAAGTGATGTAGGATACCCAAAACTAAGACCTGTTTTCTGGGTGCATAACAAAAAAGAACTATTGAATGGAAATGCTCATTCATACCCATTTCTGGACATAAGTGTGGTGCATGTCGTACCATTTTGTATAGTAGACATGGAGTCACATACTTTGAATGTCTCAGCTGTTGTATCTGGTGTTCGTCTTGGCGGGGGAGTGAACTACTTTGAGGCCCTCCTGCATCGATTTGGAATACTAGGGCCTGATGGTGGTCCAGGGAAGTGTCTGTCTAAAGGGTTGGAAAACTTACAAACTGGACCATTGGCAAAACTTTTTAAGGCAACACCTCTGATTTCTGATAATTCAGAAAATGTTGAAACTGCAGGAGAAGGGAGAGATACCAGTTTTCCAAACTTGAAGAACCCAGATATTGTGGATGTAACTATAGAGTTGAAAGACTGGTTATTTGCTCTCGAAGGTGCTCAAGAGATGGCTGAAAGATGGTGGTTCTCAGTCCATGAAGATGTAAAAAGAGAAGAGAGGTATTGGCACACAACTTTCCATACCTTGCGAGTAAATGCAAAAAGTTGCCCAAAGAATATTCCAGACAGAAAATCACAATCACGCAGAATACAACCATATCCGGTGGAACTGGTTACGGTTGGAGTTCAAGGGCTGCAGATCATGAAGCCCCACACCCAAAAGGACATTCCTATGTCACTGATAACTGTAAACGGAGTTAAAGAATTCACTGAAAAAATTGGGGGAACTGATCTTGAAGTAAGCTTGATACTATCTGAGGATAATGAACATGAATTGGTTAATTGGGAAGTCGAAAACCTAAAGTTTTTTATAAGGCAACCGAATGAGGCAGTTGTAACCAAGGAAGAGGTCCAACACCTCACTTTTCTGTGCAAATCTGAAATTGATTCTGCTGGCCGGATAACAGCTGGAGTTCTACGGCTATTTAAGCTAGAAGGCTCTGTTGGCCAGTCTGCAATTGATCAGCTTGGCAACCTAGGAAGTGAAGGCATTAACAAGATTTTTTCTCCTGAGAAGCATAGCTTAGATGGTAGTGTTTGTAGCTGTGGAGGATTCTCTCCATTACAAAACCTGACAAATGAAAGTCCAAGCAAAACTATGGAACCAACATTAGCTTTGCTTGAGGAAGCAGTTGCTGATTCAAAGGCTAAGATTAATTCTTTGATGACTGATATTGGTACTTCCGAGTCTTCCTTCCAGCACCTTACTGTTGTCAAAGACCTCAGTCAAAAGATTGAGTCGTTGCAGGGTTTAGTGCTGCAATTGCGGGAGCAACTTTAA 3633 0.4242 MESILGRALEYTLKHWLKSFSRDQFKLQGRTVQLYNLDLNGDVLHSSVGFPPALNVTAAKVGKLEITLPSVSNVQIEPIIVQIDRLNLVLEENFDFEPSETQPSASTKGSGYGFADKIADGMTIQIDTVNLLLETRGSASRQGGATWTPPMASITIHNLLLYTTNESWEVVNLKEAREFSSNKKYIYVFKKLEWESLSIDLLPHPDMFTDATLGRSQEGANLRDEDGAKRVLFGGERFIEGISGEAYITIQRTELNSPFGLEVQLHVTEAVCPALSEPGLRALLRFITGLYVCLNRGNVDFKAQQRSTEAAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLYFSRASLSEGDSDSNLTRITVAGLFLRDTFSFPPSTLVQPSMQSVTGDAFQVPAFARSFCPPIYPLGEQQWLSIVGTPLICLHSIQIVPSPLPPSFASQTVIDCQPLMIHLQEESCLTISSFLADGIVVNPGDILPDFSVKSFIFTLKGLDLTVPLDKTQLDNSETNMDNKIKTSFAGARLHIENLFFLDSPSLKLKILNLEKDPACFCLWEDQPIDASQKKWTAGVSQLTLSLEASTGKLGHQNSLGWTAGLWRCVNLRDASIEVAMVTADGNPLLKVPPPGGIVRVGIACEQYLSNTSVEQLFFVLDLYAYFGRVSEKIEIAGKKKQLKDVRNKSFSGKLMDKIPSDTSVTLTLKNLQLQFLEPSSVNAEGMPLAQFVGDDLSFSATHRTLGGAIVVSSTLNWERVVIDCVDSKEPLACEKDSYFSTVENVPSISDVGYPKLRPVFWVHNKKELLNGNAHSYPFLDISVVHVVPFCIVDMESHTLNVSAVVSGVRLGGGVNYFEALLHRFGILGPDGGPGKCLSKGLENLQTGPLAKLFKATPLISDNSENVETAGEGRDTSFPNLKNPDIVDVTIELKDWLFALEGAQEMAERWWFSVHEDVKREERYWHTTFHTLRVNAKSCPKNIPDRKSQSRRIQPYPVELVTVGVQGLQIMKPHTQKDIPMSLITVNGVKEFTEKIGGTDLEVSLILSEDNEHELVNWEVENLKFFIRQPNEAVVTKEEVQHLTFLCKSEIDSAGRITAGVLRLFKLEGSVGQSAIDQLGNLGSEGINKIFSPEKHSLDGSVCSCGGFSPLQNLTNESPSKTMEPTLALLEEAVADSKAKINSLMTDIGTSESSFQHLTVVKDLSQKIESLQGLVLQLREQL* 1211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1127 1210 Coils Coil 1155 1175 - -
Gso12g1127 1210 Coils Coil 1189 1209 - -
Gso12g1127 1210 Pfam N-terminal region of Chorein or VPS13 1 101 IPR026854 -
Gso12g1127 1210 PANTHER AMINO-TERMINAL REGION OF CHOREIN, A TM VESICLE-MEDIATED SORTER 1 1209 - -
Gso12g1127 1210 PANTHER UNCHARACTERIZED 1 1209 IPR026728 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1127 Gso-Chr12 15932658 15955314 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1127 - - gmx:100782617 2175.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1811 12 41816022 41824401 Gso12g1127 12 15932658 15955314 PCT
Gso11g3052 11 46368816 46377356 Gso12g1127 12 15932658 15955314 PCT
Gso12g1127 12 15932658 15955314 Gso12g1811 12 41816022 41824401 PCT
Gso12g1127 12 15932658 15955314 Gso11g3052 11 46368816 46377356 PCT