Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1801 ATGTGGAGAGATCCGGGAGTTCCAGCTGATTCTTTCTATGAAATCCGCCCCGAATGCACCGATGTTCCCGTTACTCGATTTAAGATCAAGGCTGGTAAAACACTAAGTGCAAGAAAATGGCATGCTGCATTTACTCCAGAAGGGTATCTAGATATAGGCAAGACTCTAAGCCGAATCTACCGTGGGGGAGTCCATCCATCAATTAAGGGAGAAGTTTGGGAATTTCTACTTGGTTGCTATGATCCCAAGAGTACATTTGAGGAAAGAGATCAGATAAGACAAAGGCGAAGAATGCAATATGCTACATGGAAAGAAGAATGCCACCAATTGTTTCCTCTTGTTGGAAGTGGTAGATTCGTCACAGCACCTGTTATTACTGAAGATGGTCAGCCAATTCAAGATCCATTGGTGTTGAAAGAAACAAGTCAGGCCAAGGGATTGGCTGTACATCCTCAATATAATAATAGTCCTTCAAGTATGGATGCTGCAAATAATTTAGCAAAGGTGACAGACAAGACAGTAGTCCAGTGGTTGTTAACTCTCCATCAAATAGGTCTTGATGTGGTTCGCACCGATAGGACATTAGTTTTTTATGAGAAGCAAGAAAACTTGTCGAAACTATGGGATATTCTTGCTGTTTATGCTTGGATAGATAAGGACGTTGGCTATGGTCAAGGAATGTGTGACCTATGCTCCCCAATGATAATTCTTCTTGATGATGAAGCAGATGCATTTTGGTGCTTTGAGCGTTTGATGCGCAGACTTCGAGGCAATTTTAGATGCACTGAGAGCTCTGTTGGTGTGGCAGCTCAACTAAGTAATTTGGCTTCAGTCACTCAAGTAATTGATCCAAAACTTCACAAACATTTAGAGCATCTTGGTGGAGGTGACTATCTTTTTGCTTTTCGAATGCTAATGGTTTTGTTTCGTCGAGAATTCTCCTTTTGTGACTCATTGTACCTTTGGGAGATGATGTGGGCTCTAGAATATGATCCTGATTTGTTCTTGATGTATGAAATGCCTCAATCAGCTTCTGAAAAGGCTGAGGGCTCAAAAGGGAAAACAAAGTCAATACGTCAATGTGGAAAGTATGAGAGAGAAATTGTGAAGAGTGGAGCAAAAAATGCTGAAGCACCTCTTCCTATGTCTGTTTTCCTTGTTGCTAGTGTATTGAAAGATAAAAGTGCAAAACTACTCCAAGAAGCACGAGGCTTGGATGATGTTGTCAAGATTTTGAATGACACAACTGGTAATATAGATGCCAAAAAAGCTTGCTGTGGGGCTATGAAACTTCACAAGAAATATTTGAAAAAGGCCAAGAAACCCTAG 1329 0.4093 MWRDPGVPADSFYEIRPECTDVPVTRFKIKAGKTLSARKWHAAFTPEGYLDIGKTLSRIYRGGVHPSIKGEVWEFLLGCYDPKSTFEERDQIRQRRRMQYATWKEECHQLFPLVGSGRFVTAPVITEDGQPIQDPLVLKETSQAKGLAVHPQYNNSPSSMDAANNLAKVTDKTVVQWLLTLHQIGLDVVRTDRTLVFYEKQENLSKLWDILAVYAWIDKDVGYGQGMCDLCSPMIILLDDEADAFWCFERLMRRLRGNFRCTESSVGVAAQLSNLASVTQVIDPKLHKHLEHLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPDLFLMYEMPQSASEKAEGSKGKTKSIRQCGKYEREIVKSGAKNAEAPLPMSVFLVASVLKDKSAKLLQEARGLDDVVKILNDTTGNIDAKKACCGAMKLHKKYLKKAKKP* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1801 442 Pfam Rab-GTPase-TBC domain 162 327 IPR000195 -
Gso12g1801 442 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 1 442 - -
Gso12g1801 442 Gene3D - 265 441 - -
Gso12g1801 442 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 267 435 IPR035969 -
Gso12g1801 442 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 39 289 IPR035969 -
Gso12g1801 442 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 1 442 - -
Gso12g1801 442 SMART tbc_4 60 352 IPR000195 -
Gso12g1801 442 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 161 259 - -
Gso12g1801 442 ProSiteProfiles TBC/rab GAP domain profile. 63 329 IPR000195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1801 Gso-Chr12 41672899 41680811 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1801 - - gmx:100805808 853.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1801 12 41672899 41680811 Gso11g3063 11 46503984 46511788 GST
Gso12g1801 12 41672899 41680811 Gso12g1120 12 15710558 15722697 PCT