Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1620 ATGGCCAACCAAGGGCATGTTCTCCCTCTCTCTGAAAAAATTTGGTTCAAGCGCACATTTCAAAGAGTAATAGACACCTTGATTTTAGTCCTTCTCCTCTTGAATCTCAGTTATCGTGTTTTCTCATCCAATAATTTCACTTTCCCATGGTTCCTTGCTTTCATATGCGAATCCTGGTTCACCTTCATTTGGATTGTGATTCTTAACACCAAGTGGAGTCCTGCAGTAACCATAACCCACCCAAATCGTCTCCTTCAACGGGTACCTGAGCTTCCACCTGTAGACATGTTTGTGACAACAGCAGATCCTGTACTTGAGCCACCCATCATCACAATCAATACTGTGTTGTCTCTGTTGGCACTTGATTATCCAGCTAACAAGTTAGCTTGCTATGTTTCTGATGATGGCTGTTCCCCACTTACTTTCTATGCCCTTGTAGAAGCCTCTAAATTCGCCAAGTTTTGGGTACCTTTCTGTAAGAAGTACAACGTGCAGGTCAGAGCACCCTTCAGATACTTTTCTAATGTTGCCATTAGCAAAAGTGAAGAGTCCCTTGAATTCAAACAAGAATGGTTACAAATGAAGGATATGTATCACAATCTTAGCCAAAATCTTGAAGAGGTGACAAGCAAAACAATTCCATTCCAACTTGATGGAGAATATGCAGTTTTCTCAAATACAGAGCAAAGAAATCATCCAACCATAATTAAGGTTATATTTGAGAACATGGATGGCCTTTCTGATCAGTTGCCTCACCTAATATACATATCAAGAGAGAAGAGGCCACAGTATCCACATAATTACAAAGCCGGAGCTATGAATGTGTTGACCAGGGTGTCTGGGTTGATGACTAATGCTCCCTTTATGTTGAACGTGGACTGTGACATGTTTGTGAACAATCCCAAGATTGTTCAACACGCTATGTGCATTTTGATGGATTCAAAAAGTGGAAAAGAAGTTGCTTTCGTTCAATGTTTCCAACAATTCTATGACGGAATAAAAGATGACCCTTTCGGAAATCAGTGGGTGGCTGTATTTGAGTACATAGTGCGGGGCATGGCAGGACTTCAAGGGCCTTTCTATTGCGGAACAAACACCTTCCATAGAAGAAAAGCTATTTATGGTGTTTATCCTGATGAAACTGGAAGCAGGAGAAATGGAAAATTAGAAGAAAAGATATTGATACAACAATTTGGAAGTTTAGAGGAGTTTGTCAAATCAGCAGCTCATGCTATGGAAGGGAGTGCATATTCTGCAAATGATATTACTCCTTCCAGCTTTATTGAGGCAGCAATCCAAGTCGCTGATTGTGGATATGAAGATGGCACTTGGTGGGGTAAACAGATGGGGTGGTTGTATGGATCACTCACAGAAGATGTGCTAACTGGGTTGAGTATGAAAAGAAGAGGTTGGAGATCAGAGTGTTGTACACCAGATCCAATTGCCTTCACAGGATGCGCTCCCGGAGGATTACTCTCTACAATGTTACAACAAAAGAGATGGTTCACTGGCCACACTGTAATCTTTTTTGGAAAGCATTCTCCTCTTATGTGCATGCTCTTTGGTAAAATCCAGTTCAGAGCAGGCTTGTCTTATTTCTGGGTTTCCACTTTGAGCTTAAGAGGTGTGTTCCTAGTTTGCTACATTGCTCTACTTGCGTATTGCATGATTACCAACACCAATATCTTTCCCAAGGGACTTGGCCTTTGGATTCCAATTACCCTTTTTGTGATTTATAACGTATATACTCTATTAGAGTACGTTAAAATTGGATTGTCAATGCGACAATGGTGGAACAATCAGAGAATGTGCATAGTTAGAACAACGACTGCATCGTTTCTTGGATTTTTGAATGGCATGGTTCAGCTATCAGGGTTATCGGACATTGCTTTTGACATAACGGAGAAGGAATACCCAACTTCTAGTGCTGATGAAAACAGTACAGATGCTGGAAGGTTCACATTCAACGAATCTCCAGTTTTTGTTATAGGCACGACCATTTTGCTGGTTTATTTGACAGCAATATTGATCAAGTTTTGGGGGTTGCAACCAACTCATAGTGGGAATGGGAGTGGACTAGGGGAGTTCATCTGTAGTACGTATGTGGTAGTGTGCTTCTGGCCATATTTGAAAGGGCTGTTTGCCAGAGGCAATTACGGGATTCCCCTATCCATCATGTGCAAATCCGCTGTCTTTGCTTTTGTCTTTGTTCACTTTTGCAGAAGTAATGGTCTCAGTTGA 2241 0.4132 MANQGHVLPLSEKIWFKRTFQRVIDTLILVLLLLNLSYRVFSSNNFTFPWFLAFICESWFTFIWIVILNTKWSPAVTITHPNRLLQRVPELPPVDMFVTTADPVLEPPIITINTVLSLLALDYPANKLACYVSDDGCSPLTFYALVEASKFAKFWVPFCKKYNVQVRAPFRYFSNVAISKSEESLEFKQEWLQMKDMYHNLSQNLEEVTSKTIPFQLDGEYAVFSNTEQRNHPTIIKVIFENMDGLSDQLPHLIYISREKRPQYPHNYKAGAMNVLTRVSGLMTNAPFMLNVDCDMFVNNPKIVQHAMCILMDSKSGKEVAFVQCFQQFYDGIKDDPFGNQWVAVFEYIVRGMAGLQGPFYCGTNTFHRRKAIYGVYPDETGSRRNGKLEEKILIQQFGSLEEFVKSAAHAMEGSAYSANDITPSSFIEAAIQVADCGYEDGTWWGKQMGWLYGSLTEDVLTGLSMKRRGWRSECCTPDPIAFTGCAPGGLLSTMLQQKRWFTGHTVIFFGKHSPLMCMLFGKIQFRAGLSYFWVSTLSLRGVFLVCYIALLAYCMITNTNIFPKGLGLWIPITLFVIYNVYTLLEYVKIGLSMRQWWNNQRMCIVRTTTASFLGFLNGMVQLSGLSDIAFDITEKEYPTSSADENSTDAGRFTFNESPVFVIGTTILLVYLTAILIKFWGLQPTHSGNGSGLGEFICSTYVVVCFWPYLKGLFARGNYGIPLSIMCKSAVFAFVFVHFCRSNGLS* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1620 746 Pfam Cellulose synthase 385 736 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gso12g1620 746 Pfam Cellulose synthase 94 383 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gso12g1620 746 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 2 746 - -
Gso12g1620 746 SUPERFAMILY Nucleotide-diphospho-sugar transferases 108 514 IPR029044 -
Gso12g1620 746 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 220 383 IPR029044 -
Gso12g1620 746 PANTHER CELLULOSE SYNTHASE H1-LIKE PROTEIN 2 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1620 Gso-Chr12 39761420 39765496 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1620 9 737 Glycosyltransferase AT2G32540 46.338 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1620 - - gmx:100788824 1525.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1620 12 39761420 39765496 Gso12g0791 12 8273663 8281649 PCT
Gso12g0791 12 8273663 8281649 Gso12g1620 12 39761420 39765496 PCT