Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0791 ATGGCCAACCAAAACTCTCTGCCCCTCTATGAGAAATTCTGGTACAAGCACAATTACAAAAGGGTAACGGAAAGCTTGCTTTCAGTCCTCCTCTTATGGTTGCTTGGTTACCGTGTTATCTCTATCAACAACTACTCTTTCCCTTGGTTTGTTGCCTTTTTATGTGAGTCGTGGTTCACCATCTCTTGGTTTTTAGCCCTAACCACTGAATGGAGTCCAGCAGTAACCAAAACCTACCCAGATCGTCTCTTGCAAAGTGTGCAAGAGCTTCCGCCAGTGGACTTGTTTGTGACAACAGCAGATCCTGAACTTGAACCACCGATTATCACAGTGAACACTGTGTTATCTCTGTTGGCACTTGATTACCCAGCTCACAAGCTAGCTTGTTATGTTTCTGATGATGGTTGCTCCCCTCTTACCTTCTACGCTCTTCAGGAAGCCTCTAAATTTGCAAAATTTTGGGTACCTTTTTGTAAGAAGTACGAAGTCCAAGTTAGAGCTCCACTCAGATATTTCTTTGACAAACCTGAGGTCTCCACAGCCAACAACACGCCAAAGTTCAAACAAGAATGGTTAAAAATGAAGGATATGTATGATCAACTTAGCCGCAAAATAGACTTGGATTCTTTTACAAAATCAAATCCATGTCTTGGAGAATTTGCGACTTTCTCAAACACTGAGAGGACAAACCATCCGTCCATAATCCAGACAAGAGTTTCTGGGTTGATAACCAACGCTCCCTTTATGTTGAACGTGGATTGTGACATGATTGTAAGTAATCCAAAGATTGTTCTGCATGCGTTGAGCATTTTGCTTGATCCCAAGGGAGAAAAAGAAGTTGCGTTTGTTCAATGTCCCCAACAATTCTATGCTACATTGAAGGACGATCCTTTTGGGAACCAGATGACAATTTTGTTCAAGAACTTGGCGCCCGGATTAGCTGGACTGCAAGGACCTTTCTACGGGGGAACAAACTGCTTCCATAGAAGAAAAGTTATTTATGGTCGTTCTCCGGATAACATTGAAAAGGGAAGCGGCATATCAGACGAGGAATTCAAAGAAAAATTTGGGGCTTCAAAGGATTTTCTGAAATCAGCTGCTTTTGCTTTGAAAGGGAGGATATATTCGCCTAATGATATTAATATTTCGAATGTTGTTGACGTAGCAAGCCAAGTTGCCGGTTGTGGATATGAATATGGCACAGGATGGGGCAAACAGGTGGGTTGGATATATGGATCAATATCAGAAGACGTACTCACCGGGCTGACCATACATGAGAAAGGTTGGAGATCAGAATTGTGTACACCAAGCCCAATTCCCTTCACTGGTTTTGCTCCAGGAGGTGGCCCAACTTCAATGGCCCAGCAAAAGAGATGGGCCACAGGAATGCTTGAAATCTTCATATGCAAGCATTGTCCTATTATTTCTTCCCTTTTCCGTAAGCTTACTTTGAGGCAGTGCTTAGCATATATGTGGATTATCAATTGGGGTCTGCAACCAGTCTTTGAAGTATGTTATGCATGTCTCCTTGCATATTGCATCATCACCAACTCCAATTTCTTGCCCCAGGACCTAGGAATATGTATCCCTATTGCATTTTTTGCAATTTACAAGGTATATACTGTATGCGAATATTTGGCAGCAGGGTTATCAGTTCGAGAGTGGTGGAACAATCAAAGGATGTCAAGAATAACATCCATGAATGCTGGTTTTTGTGCATTTCTTAGTGTCCTACTCAAGTTGTTAAGAATATCTGAAACTGTGTTTGACGTAACAAAGAAAGACTTACCCCCAACAGGAAATGTTCTAGATGATAAGGATGCTGGAAGGTACACCTTCGATGAGTCCGTAGTTTTCTTGCCAGGCACTACCATTTTGTTGTTGCAATTGACAGCAATGGTTATCAAGTTATTAGGGTTGCAACCACCAGTGCCAACTCCGAGTAGGAATGGAAGTGGACTAGGTGAGATTTTCTGTAGTGTTTATTTGATGATTTGCTATTGGCCATTTCTGAGAGGATTATTTGAGACAGGAAAGTATAGGATTCCCATGTCCACAATATGCAAAGCAGCTATATTGACATGTCTCTTTGTACACCTATGTAGAAGGATCATTACTAGTTGA 2124 0.4176 MANQNSLPLYEKFWYKHNYKRVTESLLSVLLLWLLGYRVISINNYSFPWFVAFLCESWFTISWFLALTTEWSPAVTKTYPDRLLQSVQELPPVDLFVTTADPELEPPIITVNTVLSLLALDYPAHKLACYVSDDGCSPLTFYALQEASKFAKFWVPFCKKYEVQVRAPLRYFFDKPEVSTANNTPKFKQEWLKMKDMYDQLSRKIDLDSFTKSNPCLGEFATFSNTERTNHPSIIQTRVSGLITNAPFMLNVDCDMIVSNPKIVLHALSILLDPKGEKEVAFVQCPQQFYATLKDDPFGNQMTILFKNLAPGLAGLQGPFYGGTNCFHRRKVIYGRSPDNIEKGSGISDEEFKEKFGASKDFLKSAAFALKGRIYSPNDINISNVVDVASQVAGCGYEYGTGWGKQVGWIYGSISEDVLTGLTIHEKGWRSELCTPSPIPFTGFAPGGGPTSMAQQKRWATGMLEIFICKHCPIISSLFRKLTLRQCLAYMWIINWGLQPVFEVCYACLLAYCIITNSNFLPQDLGICIPIAFFAIYKVYTVCEYLAAGLSVREWWNNQRMSRITSMNAGFCAFLSVLLKLLRISETVFDVTKKDLPPTGNVLDDKDAGRYTFDESVVFLPGTTILLLQLTAMVIKLLGLQPPVPTPSRNGSGLGEIFCSVYLMICYWPFLRGLFETGKYRIPMSTICKAAILTCLFVHLCRRIITS* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0791 707 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 230 350 IPR029044 -
Gso12g0791 707 SUPERFAMILY Nucleotide-diphospho-sugar transferases 108 484 IPR029044 -
Gso12g0791 707 PANTHER CELLULOSE SYNTHASE H1-LIKE PROTEIN 236 707 - -
Gso12g0791 707 PANTHER CELLULOSE SYNTHASE H1-LIKE PROTEIN 2 236 - -
Gso12g0791 707 Pfam Cellulose synthase 93 206 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gso12g0791 707 Pfam Cellulose synthase 340 699 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gso12g0791 707 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 2 236 - -
Gso12g0791 707 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 236 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0791 Gso-Chr12 8273663 8281649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0791 1 698 Glycosyltransferase AT2G32530 40.915 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0791 - - gmx:100500469 1422.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0791 12 8273663 8281649 Gso12g0791 12 8273663 8281649 ECH
Gso12g1620 12 39761420 39765496 Gso12g0791 12 8273663 8281649 PCT
Gso12g0791 12 8273663 8281649 Gso12g1620 12 39761420 39765496 PCT