Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1618 ATGGCTAATCAAAACACTCTCCCTCTTTATGATAAATATTGGGTGAAGCATACGTTATCAAGAGTAATGGATTCCTTGACTCTGCTCCTCCTCCTCTTACTTCTTGGTTACCGTATTAATATTTTCTCTCATAGCAACTACACTTTCCCTTGCCTTGTTGCTTTCATATGCGAGTCATGGTTCACTTTTTCTTGGATTCTCGTCATCAGCACTAAATGGTCTCCTGCATATACCAAAACCTACATACACCGTCTCTTGCTTCGGGTACCTGAGGGTGAGCTTCCAGCAGTGGATCTATTTGTGACAACAGCAGACCCAGTGCTTGAGCCTCCTATCATCACAATCAACACTGTCTTGTCTCTCTTGGCGCTTGATTATCCTCATAACAAACTTGCTTGCTATGTTTCTGATGATGGATGCTCCCCTCTTACCTTCTATGCCCTTATCGAAGCATTTCAATTTGCTAAGCTTTGGGTACCTTTCTGTAAGAAGTACAACATACAACTTAGAGTACCCTTCAGATACTTCTCCAATAACACCAGCACTGACAACAATGAAGACACGCCGGAGTTTATGCAAGACTGGTTAAAAATGAAGGTAATATGGGAAAACAAAGAAGGTCTTTCAGACGAGTTGCCTCACTTAATCTACGTATCTAGAGAAAAGAAGCAGGAACATCCACATCAATATAAAGCTGGTGCTATGAATGTGTTGACAAGAGTCTCTGGAGTGATGACAAATGCACCCTTTATCCTAAACTTAGATTGTGACATGCACGTGAATAATCCAAAGATTGTTCTACACGCCCTGTGCATTTTATTAGATTCAAAGGGAGAAAAAGAAGTTGCATTTGCCCAATGTATCCAGCAATTCTATGATGGATTAAAGGATGATCCTCTCGGAAATCAGCTTGTGGCAGCGTTTCGGTACTTGGGGGGTGGATTAGCAGGGCTCCAAGGGATATTTTACTTAGGAACAAATTGCATGCACAGAAGAAAAGTAATTTATGGCCTTTCTCCTTATCATGGCATTCAAAATGGAAAGAAGGATCATGGCGTCTCCAATGGGAAATTCTCAGAAAAGAAAACAATATTTGGTACATCAAAGGGGTTTGTGGAATCAGCTACTCATGCTTTGGAAGGGAAGACATTTACTCCCAATAACAATATTTGCAAATCTCTTGAGGCTGCGAGTGAAGTTTCTAGTTGTGAATATGAATACGGCACTGCTTGGGGAAAACAGGTGGGTTGGATGTATGGATCAACATCTGAAGATTTACTTACCGGACTGAAAATCCACACAAAAGGTTGGAGATCTGAAGTGTGCTCACCAGAACTTTCGCCTTTTATGGGATGCTCACCTCAAGATATTTTAGTTGTAATTGGTCAACAAAAGAGATGGATCTCAGGGTTGCTTGATATCCTCCTAAGCAAGCATTGTCCAATTTTTGGAACCCTATTTGGTAAGCTCCAATTCAGACAATGCTTGGGGTATCTTTGGATCACTACTTGGAGCTTACGACCCGTTCCTGAAATATGTTATGCTGCTCTCCCTGCCTATTGCATCATTAATAACTCCAGTTTCTTGCCCAAGGAACTCGGACAATGGATCCCCGCCACTTTGCTTGTGATTTACAACGTGTCTACTCTTTTAGAGAACTTGAAAATAGGATTGTCAATTCGAACATGGTGTAACAATCAACGAATGGCAAGGATAACCACCATGAATTCTTGGTTTTTTGGATTTTTGGCCATCCTACTTAAGCGATTAAGGATATCTAACATTGGCTTTGAAATAACAAGGAAAGACGAAACATTTTCCAATGAGGGTGCAAATGAAAATGATGGTAGATTCATTTTTAACAAGTCTCCAGTTTTTATACCTGGCACAACTATTTTGCTTATTCAACTCACAGCACTGGTTACCATGTGGTTGGGATGGCAACCACCTGTTAGAAACAATGGACATGGATCTGGTGTTGGGGAAGTGTTCTGTAGTACATATTTGGTTGTGTGCTATTGGCCATTTTTGAAAGGGTTATTTGAGAAAGGAAAGTATGGAATTCCCTTATCCACAATTTGCAAGTCAATGGCTCTGGCTTTCCTTTTTGTGTACTTATGCAAAGCAAATTAA 2133 0.4055 MANQNTLPLYDKYWVKHTLSRVMDSLTLLLLLLLLGYRINIFSHSNYTFPCLVAFICESWFTFSWILVISTKWSPAYTKTYIHRLLLRVPEGELPAVDLFVTTADPVLEPPIITINTVLSLLALDYPHNKLACYVSDDGCSPLTFYALIEAFQFAKLWVPFCKKYNIQLRVPFRYFSNNTSTDNNEDTPEFMQDWLKMKVIWENKEGLSDELPHLIYVSREKKQEHPHQYKAGAMNVLTRVSGVMTNAPFILNLDCDMHVNNPKIVLHALCILLDSKGEKEVAFAQCIQQFYDGLKDDPLGNQLVAAFRYLGGGLAGLQGIFYLGTNCMHRRKVIYGLSPYHGIQNGKKDHGVSNGKFSEKKTIFGTSKGFVESATHALEGKTFTPNNNICKSLEAASEVSSCEYEYGTAWGKQVGWMYGSTSEDLLTGLKIHTKGWRSEVCSPELSPFMGCSPQDILVVIGQQKRWISGLLDILLSKHCPIFGTLFGKLQFRQCLGYLWITTWSLRPVPEICYAALPAYCIINNSSFLPKELGQWIPATLLVIYNVSTLLENLKIGLSIRTWCNNQRMARITTMNSWFFGFLAILLKRLRISNIGFEITRKDETFSNEGANENDGRFIFNKSPVFIPGTTILLIQLTALVTMWLGWQPPVRNNGHGSGVGEVFCSTYLVVCYWPFLKGLFEKGKYGIPLSTICKSMALAFLFVYLCKAN* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1618 710 PANTHER CELLULOSE SYNTHASE H1-LIKE PROTEIN 198 709 - -
Gso12g1618 710 PANTHER CELLULOSE SYNTHASE H1-LIKE PROTEIN 5 197 - -
Gso12g1618 710 Pfam Cellulose synthase 97 202 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gso12g1618 710 Pfam Cellulose synthase 209 349 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gso12g1618 710 Pfam Cellulose synthase 361 703 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gso12g1618 710 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 168 343 IPR029044 -
Gso12g1618 710 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 5 197 - -
Gso12g1618 710 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 198 709 - -
Gso12g1618 710 SUPERFAMILY Nucleotide-diphospho-sugar transferases 111 477 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1618 Gso-Chr12 39727580 39735492 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1618 8 710 Glycosyltransferase AT2G32530 43.307 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1618 - - gmx:100780817 1440.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1618 12 39727580 39735492 Gso6g2530 6 47035553 47045438 PCT