Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1542 ATGGAGGTAGGAAGTGTTCTTAACTTTCTTCAGGACAGGACCATTTTAATTGTTGGAGCCACTGGCTTTCTAGCCAAAATTTTTCTGGAGAAAATATTGAGGGTTCAACCAAATGTTAAGAAGCTTTTTCTTCTTTTAAGAGCTTCGGATGCCAAATCAGCTAATTATCGATTGCAAAATGAGATCATAGCGAAGGACTTATTTATTGTGCTAAAGGAAAAATTGGGTGCAAATTTTAAGTCCTTTATTTCGGAAAAAGTGACTCTGGTGCCGGGGGATATTTCTTACGAGGACTTGGGTTTAACTGATTCCATTCTAAGGGAAGAGATTTGCAACCAGACAGATGTTATTGTCAATTTGGCAGCTACAACTAAGTTTGATGAAAGGTACGATTTAGCGTTGGGTCTAAATATCTTTGGAGTTAAGCATGTCATGAAGTTTGCTAAACAATGTGCTAAACTCAAAATTCTTCTTCATGTATCAACAGCTTATGTATGTGGTGAGAGAGGTGGACTCATACTAGAAGACCCCTATCACTTTGGTGATTCACTAAATGGAGTGTCTGGACTAGACATCGAAGCAGAAAGGACAATAGTGTGTGACAAATTGGATGAACTACGAGAGCAAGGGGCTACAGAGCGTGAAATTGAAATAGCTATGAAGAACCTGGGTATTAGCAGGGCAAAGGTGTATGGATGGCCAAACACATATGTATTTACGAAGGCAGTAGGAGAGATGCTTGTGGAACAATTAAAAGGAAGCCTATCCGTTGTTATTATGCGTCCCACCATCGTTACAAGCACATTAAGAGAACCTTTCCCTGGTTGGGCTGAGGGTGTAAGAACCATTGACAGTTTAGCTGTTACTTATGGGAAAGGAAAATTAAAATGCTTCCTTGGAAATATAAACGGAGTTGTGGATGTGGTACCAGCTGACATGGTGGTGAATGCAATGCTAGTGGCCATGGTGGCTCATGCAAAGCAGCCAAGTGATATTGTATATCATGTGGGTTCCTCTCTTAGAAATCCACTCACATACTTGAATCTCCAAGACTATGGACTAAAATATTTCACGGCAAAACCATGGATAAACAAGGATGGAACACCGGTCAAGGTTGGCAGAGTAACTGTATTAACCGACATGGATAGCTTTCAGAGATATATGTTCATTCGCTACCTACTTCCACTAAAGGGACTTGAGCTGGCCAATACTGCACTTTGCCAGTATTTTCGAGGAACTTATCTTGAGCTCCACAGGAAGATCCAGGTTGTGATGCGGATGGTTGAACTTTACAGGCCTTACATGTTCTTCGATGGCGTATTTGATGATATGAACACAGAGAAGTTGCGAATGGCAGCAAAACAAAGTGGGACAGAGACAGATTTGTTTTACTTTGATACGAAAGAGGTTAATTGGGATGATTACTTTATGAAGACCCATCTCCCTGGTATTGTCAAGTACATTTTCAAGTGA 1473 0.406 MEVGSVLNFLQDRTILIVGATGFLAKIFLEKILRVQPNVKKLFLLLRASDAKSANYRLQNEIIAKDLFIVLKEKLGANFKSFISEKVTLVPGDISYEDLGLTDSILREEICNQTDVIVNLAATTKFDERYDLALGLNIFGVKHVMKFAKQCAKLKILLHVSTAYVCGERGGLILEDPYHFGDSLNGVSGLDIEAERTIVCDKLDELREQGATEREIEIAMKNLGISRAKVYGWPNTYVFTKAVGEMLVEQLKGSLSVVIMRPTIVTSTLREPFPGWAEGVRTIDSLAVTYGKGKLKCFLGNINGVVDVVPADMVVNAMLVAMVAHAKQPSDIVYHVGSSLRNPLTYLNLQDYGLKYFTAKPWINKDGTPVKVGRVTVLTDMDSFQRYMFIRYLLPLKGLELANTALCQYFRGTYLELHRKIQVVMRMVELYRPYMFFDGVFDDMNTEKLRMAAKQSGTETDLFYFDTKEVNWDDYFMKTHLPGIVKYIFK* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1542 490 CDD FAR-N_SDR_e 13 361 - -
Gso12g1542 490 PANTHER MALE STERILITY PROTEIN 2-RELATED 2 489 IPR026055 GO:0080019
Gso12g1542 490 Gene3D - 8 371 - -
Gso12g1542 490 CDD FAR_C 390 489 IPR033640 -
Gso12g1542 490 Pfam Male sterility protein 17 318 IPR013120 -
Gso12g1542 490 PANTHER FATTY ACYL-COA REDUCTASE 2 489 - -
Gso12g1542 490 Pfam Male sterility protein 392 490 IPR033640 -
Gso12g1542 490 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 337 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1542 Gso-Chr12 38866315 38879123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1542 110 489 Acyl Lipid Metabolism Gene Families AT4G33790 57.895 5.64e-172 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1542 K13356 - gmx:100805776 966.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1542 12 38866315 38879123 Gso11g3301 11 48830000 48837031 GST
Gso12g1542 12 38866315 38879123 Gso11g1402 11 16083415 16088396 PCT
Gso11g1402 11 16083415 16088396 Gso12g1542 12 38866315 38879123 PCT