Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1492 ATGCCATTGTTAACTTCCTCTTTGTTTCACATGGTTCCTCTCTTCTCTCTTCTTTTACTCTCACTCATGATTCGTTATGGTACTTCTCAGGGTCCACCTTCACCTGGCTACTACCCTAGTTCCAAAACTAATCCTGTTAGCTTTGATGAGGGATTTAGAAACCTTTGGGGACCTCAGCATCAGAAACTAGACCAAGACTCGTTAACAATCTGGCTTGACTCCTACTCAGGGAGTGGATTCAAGTCACTTCACTCTTATCGGTCTGGATACTTTGGTGCTGCGATTAAGCTTCAACCTGGCTACACTGCAGGAGTCATAACATCTTTATACCTTTCAAACAACCAAGACTACCCAGGACACCATGATGAAATAGACATTGAGTTCCTTGGTACCACGCCAGATAAGCCATATGTCTTGCAGACAAATGTATACATCAGAGGAAGTGGAGATGGGAACATTATAGGGAGAGAGATGAGGTTTCACCTTTGGTTCGACCCAACACAAGATTTTCACAACTATGCTATTCTGTGGGAACCCAGTGAGATCATATTTTTAGTGGATGATGTCCCAATAAGGAGGTATCCTAGGAAGAGTGATGCCACGTTCCCCACAAGAGAAATGTATGTGTACGGATCAATATGGGATGCATCTTCATGGGCTACAGAGGGAGGAAAATACAAAGCTGATTATAATTACCAACCCTTCTTTGGTAGATACAAAAACTTCAAAATACTAGGTTGTACCACTGAAGCCTCAACCTCATGCCAGCCACCATCTCCTTCACCATCAGGCTATGACAGCCTTAGTCCTCAGCAATTTGCTGCAATGCAATGGGTCCAAAACAACTACTTGGTCTATGACTATTGCCATGATCCTGGGAGAGACCATACACTTACTCCAGAATGCTAA 909 0.4334 MPLLTSSLFHMVPLFSLLLLSLMIRYGTSQGPPSPGYYPSSKTNPVSFDEGFRNLWGPQHQKLDQDSLTIWLDSYSGSGFKSLHSYRSGYFGAAIKLQPGYTAGVITSLYLSNNQDYPGHHDEIDIEFLGTTPDKPYVLQTNVYIRGSGDGNIIGREMRFHLWFDPTQDFHNYAILWEPSEIIFLVDDVPIRRYPRKSDATFPTREMYVYGSIWDASSWATEGGKYKADYNYQPFFGRYKNFKILGCTTEASTSCQPPSPSPSGYDSLSPQQFAAMQWVQNNYLVYDYCHDPGRDHTLTPEC* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1492 302 SUPERFAMILY Concanavalin A-like lectins/glucanases 47 302 IPR013320 -
Gso12g1492 302 Pfam Glycosyl hydrolases family 16 50 231 IPR000757 GO:0004553|GO:0005975
Gso12g1492 302 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 267 302 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Gso12g1492 302 PIRSF EndGlu_transf 9 302 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gso12g1492 302 Gene3D - 28 302 - -
Gso12g1492 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 13 302 IPR044791 GO:0004553
Gso12g1492 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 31 13 302 - -
Gso12g1492 302 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 39 239 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1492 Gso-Chr12 38176999 38179442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1492 12 302 Glycoside Hydrolase AT3G44990 68.041 9.69e-143 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1492 K08235 - gmx:100786503 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1492 12 38176999 38179442 Gso11g3349 11 49294956 49297118 GST
Gso12g1492 12 38176999 38179442 Gso12g0653 12 6328377 6331114 PCT
Gso12g1492 12 38176999 38179442 Gso11g1463 11 16977788 16980120 PCT
Gso12g0653 12 6328377 6331114 Gso12g1492 12 38176999 38179442 PCT
Gso11g1463 11 16977788 16980120 Gso12g1492 12 38176999 38179442 PCT