Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3349 ATGAGCACCAACTACCTACCCCTTTCTTTGATTTTGTGTCCCACCCTGCATCTTAGCAGAGCCACTCTGATCACTAAAATGCCATTGTTAACTTCCTCTTTGTTCAACATGGTTCCTCTCTTCTCTCTTCTTTTGTTCTCACTCATGATTCGTTATAGTACTTCTCAGGATCCACCTTCACCTGGTTACTACCCTAGTTCCAAAATTAGTCCCGTTAGCTTTGGTGAGGGATTTAGAAACCTTTGGGGACCTCAGCATCAGAAACTAGACCAAGACTCATTAACAATCTGGCTTGACTCTTACTCAGGGAGTGGATTCAAGTCACTTCACTCTTATCGGTCTGGATACTTTGGTGCTGCGATTAAGCTTCAACCAGGTTACACTGCAGGAGTCATAACATCTTTATACCTTTCAAACAACCAAGACTACCCAGGACACCATGATGAAATAGACATTGAGTTCCTTGGTACCACGCCGGATAAGCCATATGTCTTGCAGACAAACGTATACATCAGAGGAAGTGGAGATGGGAATATTATAGGGAGAGAGATGAGGATTCACCTTTGGTTCGACCCAACACAAGATTTTCACAACTATGCTATTCTGTGGGAACCCAGTGAGATCATATTTTTAGTGGATGATGTCCCAATAAGGAGGTATCCTAGGAAGAGTGATGCCACGTTCCCCTCAAGAGAAATGTATGTGTACGGATCAATATGGGATGCATCTTCATGGGCTACAGAGGGAGGAAAATACAAAGCTGATTATAATTACCAACCCTTCTTTGGTAGATACAAAAACTTCAAAATACAAGGTTGTACCACTGAAGCTTCAACCTCATGCCAGCCACCATCTCCCTCACCACCAGGCTATGGCAGCCTAAGCCCTCAGCAACTTTCTGCAATGCAATGGGTCCAAAACAACTACTTGGTCTATGACTATTGCCATGATCCTGGAAGAGACCATACACTTACTCCAGAATGCTAA 987 0.4347 MSTNYLPLSLILCPTLHLSRATLITKMPLLTSSLFNMVPLFSLLLFSLMIRYSTSQDPPSPGYYPSSKISPVSFGEGFRNLWGPQHQKLDQDSLTIWLDSYSGSGFKSLHSYRSGYFGAAIKLQPGYTAGVITSLYLSNNQDYPGHHDEIDIEFLGTTPDKPYVLQTNVYIRGSGDGNIIGREMRIHLWFDPTQDFHNYAILWEPSEIIFLVDDVPIRRYPRKSDATFPSREMYVYGSIWDASSWATEGGKYKADYNYQPFFGRYKNFKIQGCTTEASTSCQPPSPSPPGYGSLSPQQLSAMQWVQNNYLVYDYCHDPGRDHTLTPEC* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3349 328 Gene3D - 54 328 - -
Gso11g3349 328 Pfam Glycosyl hydrolases family 16 76 257 IPR000757 GO:0004553|GO:0005975
Gso11g3349 328 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 293 328 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Gso11g3349 328 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 65 265 IPR000757 GO:0004553|GO:0005975
Gso11g3349 328 PIRSF EndGlu_transf 36 328 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gso11g3349 328 SUPERFAMILY Concanavalin A-like lectins/glucanases 73 328 IPR013320 -
Gso11g3349 328 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 31 39 328 - -
Gso11g3349 328 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 39 328 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3349 Gso-Chr11 49294956 49297118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3349 41 328 Glycoside Hydrolase AT3G44990 65.636 3.00e-139 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3349 K08235 - gmx:100796768 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1492 12 38176999 38179442 Gso11g3349 11 49294956 49297118 GST
Gso11g3349 11 49294956 49297118 Gso12g0653 12 6328377 6331114 PCT
Gso11g3349 11 49294956 49297118 Gso11g1463 11 16977788 16980120 PCT
Gso12g0653 12 6328377 6331114 Gso11g3349 11 49294956 49297118 PCT
Gso11g1463 11 16977788 16980120 Gso11g3349 11 49294956 49297118 PCT