Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0936 ATGTTGCATAAGGTGTGCAAGAGGTACAGAATCATGGTGAGTGGAAATGGTTTGTTTTACCCCGTTGTGGGGTTTGCATCGATCGTGTTGTTCATTTACATGTCTTTTGGGGATGTGAGGTTTGGTTTTGAGGAAGAAGCTGAATTGGCTTTTGTGGAGAGAAATGGGACTCAGTTTATGGTGGATGGAAAAGCTTTCTACATTAATGGGTGGAACTCTTATTGGTTAATGGTTCAATCTGTGGATGAGTATTCCAGGCCAAAGGTACGTGAAATGCTAAGGGCTGGGGCAAAGATGGGGCTAACTGTGTGTAGAACTTGGGCCTTCAATGATGGTGACTACAATGCCCTTCAGAGTTCCCCTGGTGTGTTCAATGAACAAGCTTTCAAGGCCTTGGACTATGTTATAGCAGAAGCAAGGCAACATGGAATTAGGCTGCTCCTTAGCTTAGTAAATAACTTGCATGCATATGGTGGGAAGACTCAATATGTCAAGTGGGCATGGCAAGAAGGGGTTGGATTAAGCTCGTCTAACGATTCTTTCTTCTTTGATCCATCAATCCGTAGTTATTTCAAGAATTACGTCAAGACAATTCTGACAAGGAAGAATACTATAACTGGAATTGAATATAGAAATGACCCCACCATTTTTGGTTGGGAATTGATTAATGAACCTCGGTGCCTAACTGATCCTTCTGGTGATACTCTCCAAGATTGGATAGAGGAAATGTCAGCTTTTGTCAAATTGATTGACAAGTGCCATCTTGTGACTGTTGGACTTGAAGGTTTCTATGGTCCTAATGATCCGAAAAGATTGACTGTGAACCCTGAGGATTGGGCATCTAGACTTGGATCTGACTTTATAAGGAACTCCAAAATCTCAAATATTGACTTCACCTCTGTCCATATCTATCCTGATCACTGGTTTCATCATCAGGTATTTGAAGACTACATGAAATTTGTCTCCAAGTGGATGCTTTCTCACATCGAAGATGGTGATAAGGTATTGAACAAGCCAGTCTTGTTCTCTGAATATGGGTTGTCAGACATAAATTTTACTATGCCTGAACGAAAAACAATGTACAAAACAATTTTAGATATAAGCTACAAATCTGCAAAGAAAAACAGGTCTGGAGCCGGTGCTCTAGTTTGGCAATTCTTAGTTGGAGGAATGCAGGAGTTTACTGATGATTTTGGGATCATCCCATGGGAAAAGACACCAATTCCTTCACTATTTGTTGAACAATCATGCAGATTGGCCAAGACCAAGGGATGGCCTCACAAGGACACAAGTTTTAAACAATTTTGTTAG 1311 0.4081 MLHKVCKRYRIMVSGNGLFYPVVGFASIVLFIYMSFGDVRFGFEEEAELAFVERNGTQFMVDGKAFYINGWNSYWLMVQSVDEYSRPKVREMLRAGAKMGLTVCRTWAFNDGDYNALQSSPGVFNEQAFKALDYVIAEARQHGIRLLLSLVNNLHAYGGKTQYVKWAWQEGVGLSSSNDSFFFDPSIRSYFKNYVKTILTRKNTITGIEYRNDPTIFGWELINEPRCLTDPSGDTLQDWIEEMSAFVKLIDKCHLVTVGLEGFYGPNDPKRLTVNPEDWASRLGSDFIRNSKISNIDFTSVHIYPDHWFHHQVFEDYMKFVSKWMLSHIEDGDKVLNKPVLFSEYGLSDINFTMPERKTMYKTILDISYKSAKKNRSGAGALVWQFLVGGMQEFTDDFGIIPWEKTPIPSLFVEQSCRLAKTKGWPHKDTSFKQFC* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0936 436 PANTHER - 15 436 IPR045053 GO:0004553
Gso12g0936 436 Pfam Cellulase (glycosyl hydrolase family 5) 84 385 IPR001547 GO:0004553|GO:0071704
Gso12g0936 436 PANTHER GLYCOSIDE HYDROLASE FAMILY 5 PROTEIN 15 436 - -
Gso12g0936 436 Gene3D Glycosidases 48 423 - -
Gso12g0936 436 SUPERFAMILY (Trans)glycosidases 51 414 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0936 Gso-Chr12 11121535 11125766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0936 14 436 Glycoside Hydrolase AT2G20680 69.647 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0936 K19355 - gmx:100811461 904.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0936 12 11121535 11125766 Gso12g0936 12 11121535 11125766 ECH
Gso12g0936 12 11121535 11125766 Gso6g2400 6 45621875 45626135 GST