Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0886 ATGGCTTTCCAACACGAAAACGGGTCGAATATTGACCCGAATCCTATTGGGGTGGAGACAGCAATGGCTTCCCAGCACGAAAATGGGTCGGAAATTGACCCGAACCCTACTGGGGTGGAGACATCAATGTCTTCCCTTCACGAAAACGGGTCGGAAATTGATCAGAACCTTATTGGGGCGGAGGCACATGAAGCGGAGGCTGAAAAGTTTGGAACTTTGGGTTGTGCTGGTCCTATTGAGGAAGGCTTGGAGAAGATCACTTTGGTGGGTTCCTCTCTTTCAGTTGAGGAGAACGGTGTTAAGGATGATAGTGAAATTGAAGTTGAAATTGAGAGTGAGAGTGAAAGTGAAAATTCAGAGTCTGAAAGCCCTTCTTCTGATTCTGGTAGCGGAAGTAGTAGTAGCAGCAGCGACAGTAGTAGTGATAGCGAGGACACCGACGATGATGATAAAGATGATGATGTGGAAGTTGAAGAAGGCGAGATAAGTGGTTCCGATGAAGAGAAAATGGTTAGTTGGAGCATGGCTGATGAGGATGATGATGAAGATGGTGATGTGGGAGGAGGACCCATCAGGTCAAAGAACGAGCTTCAGAATCTGCCTCCTGTTCCTCCGGTCGATGTGACTTTGGAACCACACCATCAAACACTGCCAGTGGGAATTGTTACGTCGATTCTTGGTGCTCAAGTCATTGTGGAAGGAGTGGAGAAGCATGGCCCTCTTAATGAGGGTTCTATTCTTTGGTTGACTGAAAGTAGAAAACCATTAGGTTTAATTGATGAAATTTTTGGACCAGTCAAGAATCCTTATTATGTTGTGAGATACAATTCTGAAAGTGAAGTCCCCACGGGGATCCATGAGGGAACCTTGATCTCCTTTGTTCCAGAATTTGCTGATCATGTGCTTAATAACAAGGATCTTTATAGGAAAGGGTATGATGCATCTGGTGCAGATGATGAAGAGTTGTCTGATGAAATGGAGTTTTCAGATGATGAGAAAGAGGCTGAATACAAGAGAATGCAAAAACAGACAAAGAGAGGCGCAAACGATCAAAATCATGGCAAGAAAAAAAACAACAGAAAGAAATTTTCACCGAAAGAGCATGCGGCACCTACCATCCATGCTGCACCAATGCTTCATCATGGAAACTGTCCTCCTTTTTCTGGCACTGGACAAGGTCTTATGGGGGGAACTACCCCACTTCCACCCTTAAACGTAGCTCCAACCTTTGCTACAAATGGAGTCTGGACAAACGGAACAACATTTCCACATCAGCAACAGTCTCCCATGCTTCCTAATGGATATCCCACAAATGGCATGCCATGGTACCCACAAAACCCTCAAATTTCTCCTCAGTTTCCTATGCCAGGAATTCCATTTCAACAGCAATTACATCCCAATCAGGGATCTCTTCCCACAACTATGCTACCTGGGATGCCCGATATGTTTGCTCAATCCCAATATGCAGCAGGACTTGCCGGTCAAAATCAAATGGCATTTGGGATGGGTTCACCCTTTCCACAGAGTCAGCCACCTATGTTTGCTGCACAGCAGGGTTTTCCATCCACCGAATTGCATTCCCAAAGAAACCTGAATTTTCATTCTAATACTATATCTGGCGCCCGATCTCAATTTCATCCGCGTTCAAATGCTAATCGTGGGAGAAAAACATTTCATGGTGCAGGTAGGAAAGGGTGGCGACCACCCAAGTGA 1713 0.453 MAFQHENGSNIDPNPIGVETAMASQHENGSEIDPNPTGVETSMSSLHENGSEIDQNLIGAEAHEAEAEKFGTLGCAGPIEEGLEKITLVGSSLSVEENGVKDDSEIEVEIESESESENSESESPSSDSGSGSSSSSSDSSSDSEDTDDDDKDDDVEVEEGEISGSDEEKMVSWSMADEDDDEDGDVGGGPIRSKNELQNLPPVPPVDVTLEPHHQTLPVGIVTSILGAQVIVEGVEKHGPLNEGSILWLTESRKPLGLIDEIFGPVKNPYYVVRYNSESEVPTGIHEGTLISFVPEFADHVLNNKDLYRKGYDASGADDEELSDEMEFSDDEKEAEYKRMQKQTKRGANDQNHGKKKNNRKKFSPKEHAAPTIHAAPMLHHGNCPPFSGTGQGLMGGTTPLPPLNVAPTFATNGVWTNGTTFPHQQQSPMLPNGYPTNGMPWYPQNPQISPQFPMPGIPFQQQLHPNQGSLPTTMLPGMPDMFAQSQYAAGLAGQNQMAFGMGSPFPQSQPPMFAAQQGFPSTELHSQRNLNFHSNTISGARSQFHPRSNANRGRKTFHGAGRKGWRPPK* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0886 570 MobiDBLite consensus disorder prediction 121 140 - -
Gso12g0886 570 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 13 563 IPR040309 GO:0000493|GO:0003723|GO:0005732|GO:0042254
Gso12g0886 570 MobiDBLite consensus disorder prediction 533 551 - -
Gso12g0886 570 Gene3D Probable tRNA pseudouridine synthase domain 188 294 IPR038664 -
Gso12g0886 570 MobiDBLite consensus disorder prediction 332 354 - -
Gso12g0886 570 MobiDBLite consensus disorder prediction 141 163 - -
Gso12g0886 570 MobiDBLite consensus disorder prediction 102 120 - -
Gso12g0886 570 MobiDBLite consensus disorder prediction 314 367 - -
Gso12g0886 570 MobiDBLite consensus disorder prediction 91 201 - -
Gso12g0886 570 SUPERFAMILY Translation proteins 218 279 IPR009000 -
Gso12g0886 570 MobiDBLite consensus disorder prediction 1 63 - -
Gso12g0886 570 Pfam Gar1/Naf1 RNA binding region 218 298 IPR007504 GO:0001522|GO:0042254
Gso12g0886 570 MobiDBLite consensus disorder prediction 21 52 - -
Gso12g0886 570 MobiDBLite consensus disorder prediction 533 570 - -
Gso12g0886 570 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 13 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0886 Gso-Chr12 9949601 9952285 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0886 K14763 - gmx:102660668 1041.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0886 12 9949601 9952285 Gso12g0886 12 9949601 9952285 ECH
Gso12g0886 12 9949601 9952285 Gso6g2438 6 46074332 46076988 GST