Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0838 ATGGAAGCTTGCTGCTGCAACCTTGAAGTGGATGTAAATGGAGAAGAGACTTTCATGGTGGACAAGACTGTTATTACTCAGTATTCAAACAAATTTGCTAGACTGTTTGGAAAGTCTAGTGGTGCCACAGGAAAGCTTAAAGTAATATTCCATGATTTTCCAGGAGGTGCTGAAGGCTTTGAGCTTATGTTAAAATTCTCTTACAACAATGGAACAGCTGATATAAGTCCTTCCAATTTGTTTCTGGCGTGTTGTGCTGCTGAGTACATGGAAATGAAGGAACCTGTGGCTGATGTTTCTAACTTATTGGAGCAAACTGAAAAGTCACTCCAAGAGATTAGCTATTGGACTTGGTCAGATCTTTTAATTGGTTTGAAACAGTGCCAGAGTTTACTAGTTCCAGATTCTTCTGTGATGGTAGAGAGATGCTTGGATACTATTGTGGGAAGGCTTGTTTTGGCCAGTGAAGCAAGTCCTTGTCCATCAACTAGTTCCACAGACAGTTCTTGGGTTCGGTATTCGTGTGACTCTAAGAGCACTGAGAGTGTAAAAACAAGTTTCTCTCGTTTAACATGGTGGTTTGAAGATCTCCTGTTTTTGAGTCCCTTGTTGGTTGCAATGTTGGTTAAGTTAATGCTTTCACGAAAGATGGATCATGTTGTGATCAGCAAGTTTCTTCTCTACTATCAGAAGGCCAAATTTTCCACTGCTACTACACATGAGAAGTGCAAGATCATAGAAATGGTCATAGATATGCATTATGATATGGATTTAAGTTGTGTTCCTTGCAAGACATTGTTTGGGATTCTGAGGGTTACTTTGGGTTTGAACATAAGCAAATGTAGCAGGAATAAGTTGGAGACTATGATTGGTTCCCAATTGGATCATGCAACCTTGGACAATTTGCTTGTTCCTTCTCCTTATGGAATAAGCTACTTGTATGATGTGAACCTTATTTTGAGATTTTTGAAGGCATTCTTGCGGCGAGGAAATGGTCTAGTCACTCCCATTCGGAAAGTTGCTAGCTTAATAGATTTGTATATAGCAGAAATAGCCCCTGATCCTTGTTTGAAAACTTCAAAGTTCTTGGCTCTTGCCACAGCAATTCCAGATTCTGCAAGAGATTCTTATGATGAGCTCTACCATGCAATGGACATGTATCTTGAGGTACACACTCAATTATCACAGGAAGAAAGACTGAAGATATGCTGTGGTTTAAATTTTGAGAAGCTTTCACCTCAAGCTTGTCTACACCTTTCTCAGAACAAAAAATTTCCTTCAAAATTTGCGGTTCAAGCTCTTATCTCTCAACAATCTAAGCTGAAAAATTTACTCCATATGACTCCCAGTACATCTTCATACAATGATTCACCTTGCAACTCCAGTGGTGCTGCTCAAAAGGGAAAGAAAAACAAAACCAGTGAACAAGTTGTGTTGTATTCTAGCAATTTTGATATTTCTACAGACAATGAGAAACTCGAAGCACATTTACAAGGAATGCAGTGGAGGGTCATGGAATTAGAGAAATTCTGTAGGAAAATGCAAATCCAAATGGCAAAGATCACAAAATCAAAAGCATCAGGCCATAGTTATGCAAAATCTTTGCCCAAGCTATGCTCATGA 1623 0.3906 MEACCCNLEVDVNGEETFMVDKTVITQYSNKFARLFGKSSGATGKLKVIFHDFPGGAEGFELMLKFSYNNGTADISPSNLFLACCAAEYMEMKEPVADVSNLLEQTEKSLQEISYWTWSDLLIGLKQCQSLLVPDSSVMVERCLDTIVGRLVLASEASPCPSTSSTDSSWVRYSCDSKSTESVKTSFSRLTWWFEDLLFLSPLLVAMLVKLMLSRKMDHVVISKFLLYYQKAKFSTATTHEKCKIIEMVIDMHYDMDLSCVPCKTLFGILRVTLGLNISKCSRNKLETMIGSQLDHATLDNLLVPSPYGISYLYDVNLILRFLKAFLRRGNGLVTPIRKVASLIDLYIAEIAPDPCLKTSKFLALATAIPDSARDSYDELYHAMDMYLEVHTQLSQEERLKICCGLNFEKLSPQACLHLSQNKKFPSKFAVQALISQQSKLKNLLHMTPSTSSYNDSPCNSSGAAQKGKKNKTSEQVVLYSSNFDISTDNEKLEAHLQGMQWRVMELEKFCRKMQIQMAKITKSKASGHSYAKSLPKLCS* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0838 540 SMART BTB_4 6 107 IPR000210 GO:0005515
Gso12g0838 540 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 12 540 - -
Gso12g0838 540 PANTHER OS12G0117600 PROTEIN 12 540 IPR043454 -
Gso12g0838 540 ProSiteProfiles BTB domain profile. 6 70 IPR000210 GO:0005515
Gso12g0838 540 MobiDBLite consensus disorder prediction 451 470 - -
Gso12g0838 540 SUPERFAMILY POZ domain 5 103 IPR011333 -
Gso12g0838 540 ProSiteProfiles NPH3 domain profile. 191 440 IPR027356 -
Gso12g0838 540 Pfam NPH3 family 191 416 IPR027356 -
Gso12g0838 540 Gene3D Potassium Channel Kv1.1; Chain A 2 117 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0838 Gso-Chr12 9086940 9090946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0838 18 520 EF-hand Containing Proteins AT3G44820 25.972 1.28e-49 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0838 - - gmx:100786499 1067.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0838 12 9086940 9090946 Gso12g0838 12 9086940 9090946 ECH
Gso12g0838 12 9086940 9090946 Gso6g2482 6 46562249 46566156 GST