Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0819 ATGTCCCATTTTGGTCGGAAACTCAGCCGCTCCTCCACCGTCCGGCGACGGTTCCACCACCGCGTTTCCCTGCTCCAGCGGTGCCTCCTCCGCGTCCTCCACCGCATCCTCCTCTGCTCCGGGAGCAAGGCCACCAATGCCACGTATAGCATGCTGCCGCCGGCATTGCCCTCTCCGCCGCCGCCGGTGAGCTCCGACGGCGAGCTTGGCCGTGAAGAGATGGACCTTTCTTCGTCGGCGGTGTTTCAGACCCATGACTTGGACTCTGATTTGGTTTCCTTGAAGATCAGCTTGTTGGGGGATTGTCAAATTGGAAAAACCAGCTTTTTGGCGAAATATGTTGGGGATGAAAAAGAGCAGCAAGGGAACCAGAGGGAAGGGTTAAATCAGATGGACAAGACTTTGGTTGTTGAAGGAGCACGTATATCGTATTGTATCTGGGAAGTACAAGGTGATGGAAAATCAGAAGACCAACTCCCAATGGCTTGTATGGACTCCGTGGCAATTTTGATTATGTTTGATCTAACAAGTCGATGCACATTAAACAGTGTCGTGGGATGGTACAAAGAAGCCAGAAAATGGAATCAGACGGCAATTCCAGTGTTGATTGGAACCAAGTTTGATGATTTCATTCAGCTCCCTATTGATTTGCAATGGACCATCGCCAATGAGGCAAGAAAATATGCAAAGGCCCTCAATGCCACCTTGTTCTTTTCAAGTGCAACCTACAACATCAATGTGAATAAGATCTTCAAGTTCATCACTGCTAAACTCTTTGACCTACCATGGACAGTGGAGAGGAATCTAACTGTTGGGGAACCCATCATTGACTTCTAA 837 0.491 MSHFGRKLSRSSTVRRRFHHRVSLLQRCLLRVLHRILLCSGSKATNATYSMLPPALPSPPPPVSSDGELGREEMDLSSSAVFQTHDLDSDLVSLKISLLGDCQIGKTSFLAKYVGDEKEQQGNQREGLNQMDKTLVVEGARISYCIWEVQGDGKSEDQLPMACMDSVAILIMFDLTSRCTLNSVVGWYKEARKWNQTAIPVLIGTKFDDFIQLPIDLQWTIANEARKYAKALNATLFFSSATYNINVNKIFKFITAKLFDLPWTVERNLTVGEPIIDF* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0819 278 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 269 IPR027417 -
Gso12g0819 278 Gene3D - 85 268 IPR027417 -
Gso12g0819 278 SMART rab_sub_5 94 261 - -
Gso12g0819 278 ProSiteProfiles small GTPase Rab1 family profile. 88 278 - -
Gso12g0819 278 PANTHER MONOMERIC G-PROTEIN 39 277 - -
Gso12g0819 278 Pfam Ras family 95 258 IPR001806 GO:0003924|GO:0005525
Gso12g0819 278 PANTHER - 39 277 - -
Gso12g0819 278 MobiDBLite consensus disorder prediction 50 70 - -
Gso12g0819 278 PRINTS Transforming protein P21 ras signature 94 115 - -
Gso12g0819 278 PRINTS Transforming protein P21 ras signature 135 157 - -
Gso12g0819 278 PRINTS Transforming protein P21 ras signature 196 209 - -
Gso12g0819 278 PRINTS Transforming protein P21 ras signature 236 258 - -
Gso12g0819 278 SMART rho_sub_3 96 260 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0819 Gso-Chr12 8687789 8691435 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0819 K07976 - gmx:100780638 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0819 12 8687789 8691435 Gso12g0819 12 8687789 8691435 ECH
Gso12g0819 12 8687789 8691435 Gso6g2506 6 46789102 46793010 GST