Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0747 ATGGCGCCAAGGAAACCTCGCGAGCGTGAAATGCTGCTCGAGTCCGTTATCGCGCTCATCTTCATCTTCGTCGCCTGCGTCGACCTCTGCGACGGCGCCACTGTCGTCGACGTCTACCGCCTCATCCAGTACGACATGTCCGGAGTCCCCTTCGGATCTCGACTCGCCAGCCTCAACCACCACGCCGCCTCGCTCCACTTCTCTCCACACGTCGATCTCTCTCGCACCGTCCTCCTCATACCACTTCGCGAACTCAACATGTCTTTTGTCAAAGAATATATTGCTGAAAGCAAGCCTCTTGGGGGTTTAATATTTTTGCTTCCCCGGATGTTCAGTTTTGAAAACAAAGATGGTATGGGAAGTAATCATCAAGATGAGAGTAAAGAATTGCTGAAGAATGCATTGGATGAACTTGAACAAATACTTATACACGCCAACTTACCTTATCCTGTTTATTTTGCATTTGAGGATGATAACATTGATGCTGTGTTAACTGATATCAAGAAGAATGATGTCACTGGTCAGCCTGCTACGGCAACAACTGGCGGATACAAATTTGTTGTTTCAGCCCCAGAACCAAAGAAAGTTGTATCTCCTCCCATTACAAATATTCAGGGATGGTTGGCAGGACTGAAGACAGATGATGATGCTCATCAATTACCCACCATTGCAATAGTTGCATCATATGACACCTTTGGGGCTGCTCCTGCATTATCAGTGGGAAGCGATAGTAATGGAAGTGGCATTGTGGCTCTTCTTGAAGTAGCTAGGTTGTTTTCTCTCTTATATTCTAATCCAAAGACAAGAGGTCAATACAATCTGCTGTTTGGGCTAACTTCTGGTGGGCCTTATAACTACAATGGAACCCATAAGTGGCTTAGGAGCTTTGATCAACGTCTGCGTGAGAGCATTGACTATGCTATTTGCTTGGATAGTATTGGCTCTTGGGAAAATGAATTGTGGATTCATGTGTCTAAGCCTCCGGAAAATGCCTTTATTAAGAAAATTCATGAAGATTTTTCAAGGGTTGCAGAAGAATTAGGCTTTAAAGTGAATCTGAAGCATAAGAAAATTAACATTTCCAATCCTCGAGTAGCTTGGGAGCATGAACAGTTTTCAAGGCTGAGAGTTACTGCGGCCACCCTTTCTGAACTCTCTACAGCACCTGAATTGCTAGGGAAGACTGGTGGTTTGGTTGATGGCAGGCATTTTGTCAATGAAGCGGCTATTGTCAGAAGTGTGAAATTAATTGCTGAGAGTCTTGCGAGGCATATCTATGGACATCAAGGAAAGAACATTCAGATCTTTGCAGACAACAGTAACTTGGCTGTCAATCCTTCTTATGTTCAATCATGGTTAGATGTTTTGTCCCAAACGCCTCGAGTAGCTCCATTTTTGTCAAAAGGTGATCCTTTTGTAATGGCACTGAAAAAGGAATTAGAAGACCATACTGATGAGGTAAATCTACATAGAGATGTGCTTGATGGGATGTTCACTTTCTATGATTCAACCAGGGCAAAGCTGAACATATATCAGGTTGCCAGTGTCACATTTGACTTGCTGTTGCTTCTAGTGCTGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGGGTCTTGATGATCTAATCAGTCTATTTCGGCGGCCTCCCTCTCGAAAAGTGAAAACTGCATAG 1689 0.4393 MAPRKPREREMLLESVIALIFIFVACVDLCDGATVVDVYRLIQYDMSGVPFGSRLASLNHHAASLHFSPHVDLSRTVLLIPLRELNMSFVKEYIAESKPLGGLIFLLPRMFSFENKDGMGSNHQDESKELLKNALDELEQILIHANLPYPVYFAFEDDNIDAVLTDIKKNDVTGQPATATTGGYKFVVSAPEPKKVVSPPITNIQGWLAGLKTDDDAHQLPTIAIVASYDTFGAAPALSVGSDSNGSGIVALLEVARLFSLLYSNPKTRGQYNLLFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLDSIGSWENELWIHVSKPPENAFIKKIHEDFSRVAEELGFKVNLKHKKINISNPRVAWEHEQFSRLRVTAATLSELSTAPELLGKTGGLVDGRHFVNEAAIVRSVKLIAESLARHIYGHQGKNIQIFADNSNLAVNPSYVQSWLDVLSQTPRVAPFLSKGDPFVMALKKELEDHTDEVNLHRDVLDGMFTFYDSTRAKLNIYQVASVTFDLLLLLVLGSYLIVLFSFLVITTRGLDDLISLFRRPPSRKVKTA* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0747 562 Pfam Nicastrin 223 360 - -
Gso12g0747 562 CDD M28_nicalin_like 135 428 - -
Gso12g0747 562 PANTHER NICALIN 7 561 - -
Gso12g0747 562 ProSitePatterns EF-hand calcium-binding domain. 243 255 IPR018247 -
Gso12g0747 562 Gene3D Zn peptidases 120 419 - -
Gso12g0747 562 SUPERFAMILY Zn-dependent exopeptidases 187 384 - -
Gso12g0747 562 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Gso12g0747 562 Coils Coil 473 493 - -
Gso12g0747 562 PIRSF Nicalin 3 557 IPR016574 GO:0009966|GO:0016020
Gso12g0747 562 PANTHER NICALIN 7 561 IPR016574 GO:0009966|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0747 Gso-Chr12 7527494 7539595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0747 5 560 EF-hand Containing Proteins AT3G44330 72.093 0.0 829
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0747 - - gmx:100778865 1103.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0747 12 7527494 7539595 Gso11g1369 11 15575357 15584154 GST