Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1369 ATGGCGCCAAGGAAACCTCGCGAGCGTGAAATGCTGTTCGACTCCGTCATCGCGCTCGTCTTCATCCTCGTTGCCTGCGTCGACCTCTGCGACGGCGCCACCGTCGTCGACGTCTACCGCCTCATCCAGTACGACATGTCCGGCGTCCCCTTCGGATCTCGACTCGCCAGCCTCAACCACCACGCCGCCTCGCTCCACTTCTCTCCGCACGCCGATCTCTCTCGCACCGTCCTCCTCATACCGCTTCGTGAACTCAACATGTCTTTTGTCAAAGAGTATATTGCTGAAAGCAAGCCTCTTGGGGGTTTAATATTTTTGCTTCCCCGGATGTTCAGTTTTGAAAACAAAGATGGTATGGGAAGTAATCATCAAGATGAGAGTAAAGAACTGCTGAAGAATGTATTGGATGAACTTGAAAAAATACTTATACATGCCAACTTACCTTATCCTGTTTATTTTGCATTCGAGGATGATAACATTGATGCTGTGTTAACTGATATCAAGAAGAATGATGTCACTGGTCAGCCTGCTACAGCAACAACTGGCGGATACAAATTTGTTGTTTCGGCCCCAGAACCAAAGAAAGTTGTATCTCCTCCCATTACAAATATTCAGGGATGGTTGGCAGGACTGAAGACAGATGATGATGCTCATCAATTACCCACCATTGCAATAGTTGCTTCATATGACACCTTTGGGGCTGCTCCTGCATTATCAGTGGGAAGCGATAGTAATGGAAGTGGCATTGTGGCTCTTCTTGAAGTAGCTAGGTTGTTTTCTCTCTTATATTCTAATCCAAAGACAAGAGGACAATACAATCTGCTGTTTGGGCTAACGTCTGGTGGGCCTTATAACTACAATGGAACCCATAAGTGGCTTAGGAGCTTTGATCAACGTCTGCGTGAGAGCATTGACTATGCTATTTGCTTGGATAGTATTGGCTCTTGGGAAAATGAATTGTGGATTCATGTATCTAAGCCTCCAGAAAATGCCTTTATTAAGAAAATTCATGAAGATTTTTCAAGTGTTGCAGAAGAATTAGGCTTTAAAGTGAATCTGAAGCATAAGAAAATTAACATTTCCAATCCCCGAGTAGCTTGGGAGCATGAACAGTTTTCAAGGCTGAGAGTTACTGCGGCCACCCTCTCTGAACTCTCTACAGCACCTGAATTTCTAGAGAAGACTGGTGGCTTGGTTGATGGAAGGCATTTTGTCAATGAAGCGGCTATTGTCAGAAGTGTGAAATTAATTGCTGAGAGTCTTGCGAGGCATATCTATGGACATCAAGGAAAGAACATTCAGATCTTTGCAGACAACAGTAACTTGGCTGTCAATCCTTCTTATGTTCGATCATGGTTAGATGTTTTGTCCCAAACGCCTCGAGTAGCTCCATTTTTCTCAAAAAGTGATCCTTTTGTCATGGCACTGAAAAAGGAATTAGAAGATCATACTGATGACGTAAATCTGCATAGAGATGTGCTTGATGGGATTGTCACTTTCTATGATTCAACCAGCACAAAGCTTAACATTTATCAGGTTGCTAGTGTCACATTTGACTTGCTGTTGCTACTAGTATTGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGGGTCTTGATGATCTAATCAGTTTATTCCGGCGGCCTCCCTCTCGAAAAGTGAAAACTGCATAG 1689 0.4387 MAPRKPREREMLFDSVIALVFILVACVDLCDGATVVDVYRLIQYDMSGVPFGSRLASLNHHAASLHFSPHADLSRTVLLIPLRELNMSFVKEYIAESKPLGGLIFLLPRMFSFENKDGMGSNHQDESKELLKNVLDELEKILIHANLPYPVYFAFEDDNIDAVLTDIKKNDVTGQPATATTGGYKFVVSAPEPKKVVSPPITNIQGWLAGLKTDDDAHQLPTIAIVASYDTFGAAPALSVGSDSNGSGIVALLEVARLFSLLYSNPKTRGQYNLLFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLDSIGSWENELWIHVSKPPENAFIKKIHEDFSSVAEELGFKVNLKHKKINISNPRVAWEHEQFSRLRVTAATLSELSTAPEFLEKTGGLVDGRHFVNEAAIVRSVKLIAESLARHIYGHQGKNIQIFADNSNLAVNPSYVRSWLDVLSQTPRVAPFFSKSDPFVMALKKELEDHTDDVNLHRDVLDGIVTFYDSTSTKLNIYQVASVTFDLLLLLVLGSYLIVLFSFLVITTRGLDDLISLFRRPPSRKVKTA* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1369 562 CDD M28_nicalin_like 135 428 - -
Gso11g1369 562 PANTHER NICALIN 8 561 IPR016574 GO:0009966|GO:0016020
Gso11g1369 562 ProSitePatterns EF-hand calcium-binding domain. 243 255 IPR018247 -
Gso11g1369 562 Pfam Nicastrin 223 360 - -
Gso11g1369 562 PIRSF Nicalin 3 557 IPR016574 GO:0009966|GO:0016020
Gso11g1369 562 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Gso11g1369 562 PANTHER NICALIN 8 561 - -
Gso11g1369 562 SUPERFAMILY Zn-dependent exopeptidases 187 386 - -
Gso11g1369 562 Gene3D Zn peptidases 154 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1369 Gso-Chr11 15575357 15584154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1369 5 560 EF-hand Containing Proteins AT3G44330 72.093 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1369 - - gmx:100779713 1102.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1369 11 15575357 15584154 Gso11g1369 11 15575357 15584154 ECH
Gso12g0747 12 7527494 7539595 Gso11g1369 11 15575357 15584154 GST