Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0717 ATGAAGGTTCAAGAAACGAGGTCGCATGTTCATGCACTTGGGGAAGAAGAGAAGGTGATGACAAGGAAGCAGAAGGCTGAGTCCAAGGCACATGAAGTGGAACATTCTCCAAAGAAGGCCAAGGTGGAAAAAGAAGATGGCCACATCAACGGGAAATCTTATACTGGCGTTGCAGAAGAATATGATGAGTTCTGCAAAGCCACAACCGAGCACCTTCCTTTGGAACAAATGAGAGACATTCTGGAGGCCAATGGCCTTGATTCTTCTGGCTCTGATCTTGAAATTACAAGAAGATGCCAAGACTTGCTGTTTTATGGTGCATTGGACAAATGCTCGGTTTGCAATGGGAGTTTGGAGTTTGATGGCAGACGTTATGTTTGCAGAGGGTTCTACAGTGAGTGGGCTAGTTGCACTTTCAGCACCAGAAACCCTCCAAGGAAACAGGAACCCATTAAGTTACCTGATTCTGTTCAGAACTCTCTGGCTTCAGACTTGCTAAAGAAATATCAGGACCCGAGTCACAGGCCTCACAGGGATCTAGGCTTAGCAGAAAAACCCTTTACTGGAATGATGATCTCTCTGATGGGTCGTCTTACTCGGACACACCATTATTGGAAAACAACTATTGAAAAGCATGGAGGGAAGGTGGCAAACTCTATAATTGGGTCAACTTGTTTGGTAGCTTCACCTGCTGAGCGAGAACGTGGTGGCACATCCAAACTTGCAGAAGCCATGGAGAGGAGTATACCAGTGGTTAGGGAGGCTTGGTTGATTGACAGCATTGAAAAGCAAGAACCACAACCTTTGGAAGCTTATGATCTTGTCTCTGATCTTTCTGTGGATGGCAAGGGTATCCCCTGGGACAAACAAGATCCTGGGGAAGAGGCTATCGAATCACTCTCAGCAGAACTCAAGCTTTATGGGAAGAGAGGAGTCTATAAAGATACCAAGTTGCAGGAACAAGGTGGAAAGATATTTGAAAGAGATGGGATACTATACAACTGTGCCTTCTCTGTTTGTGACCAAGGGCGAGGACTGAATGACTACTGTGTCATGCAACTGATTGTTGTCCCAGAGAATCGTTTGCATCTGTACTTTAAGAAAGGGAGAGTTGGGGATGATCCAAATGCAGAGGAGCGATTAGAAGAGTGGGACAATGTAGATGGTGCTCTGAAAGAGTTTGTGAGGCTCTTTGAGGAAATAACAGGAAATGAGTTTGAACCTTGGGAAAGAGAGAAGAAGTTCCAAAAGAAACCTTTGAAGTTTTACCCCATTGACATGGATGATGGAATTGAAGTTAGACATGGGGCACTAGGTCTTCGGCAGCTGGGGATAGCAGCAACACACTGCAAACTTGAGCCTTTGGTTGCAAATTTTATGAAGGTCTTGTGCAGCCAGGAGATATATAAGTATGCATTGATGGAGATGGGTTACGACTGTCCGGACCTTCCAATAGGAATGGTTACAAATCTTCATCTGAAAAAATGTGAGGACGTTCTCTTAGAATTCATAGACAAGGTGAAATCATTGAAAGAGACTGGGCCCAAGGCTGAGGCTGTGTGGACTGATTTTAGCCAAAGATGGTTCACTCTGATGCACTCCACAAGGCCTTTCAATTTTAGAGATTACCAAGAGATTGCAGATCACGCTGCTGCTGCGTTAGAGGGGGTGAGAGACATAACCCAGGCTTCTCACCTCATAGGAGATATGACTGGCTCAACCATTGATGACCCGTTATCAGAGACATACAAGAAATTGGGTTGCTCAATTTCTGCCTTGGACAAAAGTTCAGATGATTACGAGATGATTGTGAAATACCTTGAAAAAACTTATGAGCCGGTCAAAGTTGGTGACATTGAATATGGGGTGTCAGTGGAAAACATTTTTGCGGTTCAAACAGGTGGTTGCCCTTCCTATGAAGACATTATAAAACTACCAAATAAGGTTCTTCTATGGTGTGGATCACGAAGCTCAAACCTCTTGAGGCACTTGCAAAAGGGATTCTTGCCAGCAATATGCTCATTACCTATTCCGGGTTATATGTTTGGCAAAGCTATTGTCTGTTCTGATGCTGCAGCAGAGGCTGCAAGATATGGTTTTACTGCTGTGGACAGGCCAGAAGGATTCTTGGTTTTGGCCATTGCTTCTCTAGGAAATGAGATTACCGAGTTGAAAACCCCACCTGAGGATGCATCATCTTTGGAGGAAAAGAAGGTTGGAGTGAAGGGACCGGGGAAGAAGAAAACAGATGAATCGGAGCATTTTGTTTGGAAAGATGATATAAAAGTTCCTTGCGGTAAACTAGTTGCCTCAGACCATCAAGATAGCCCCCTGGAATACAACGAGTATGCTGTCTACGATAAAAAGCGGGCACGCATAAGCTACTTGGTGAGAGTGAAGTATGAAGAGAAGGAAGAGAAGGGTGCGGTGATTGACACAGCTGAATGA 2448 0.4457 MKVQETRSHVHALGEEEKVMTRKQKAESKAHEVEHSPKKAKVEKEDGHINGKSYTGVAEEYDEFCKATTEHLPLEQMRDILEANGLDSSGSDLEITRRCQDLLFYGALDKCSVCNGSLEFDGRRYVCRGFYSEWASCTFSTRNPPRKQEPIKLPDSVQNSLASDLLKKYQDPSHRPHRDLGLAEKPFTGMMISLMGRLTRTHHYWKTTIEKHGGKVANSIIGSTCLVASPAERERGGTSKLAEAMERSIPVVREAWLIDSIEKQEPQPLEAYDLVSDLSVDGKGIPWDKQDPGEEAIESLSAELKLYGKRGVYKDTKLQEQGGKIFERDGILYNCAFSVCDQGRGLNDYCVMQLIVVPENRLHLYFKKGRVGDDPNAEERLEEWDNVDGALKEFVRLFEEITGNEFEPWEREKKFQKKPLKFYPIDMDDGIEVRHGALGLRQLGIAATHCKLEPLVANFMKVLCSQEIYKYALMEMGYDCPDLPIGMVTNLHLKKCEDVLLEFIDKVKSLKETGPKAEAVWTDFSQRWFTLMHSTRPFNFRDYQEIADHAAAALEGVRDITQASHLIGDMTGSTIDDPLSETYKKLGCSISALDKSSDDYEMIVKYLEKTYEPVKVGDIEYGVSVENIFAVQTGGCPSYEDIIKLPNKVLLWCGSRSSNLLRHLQKGFLPAICSLPIPGYMFGKAIVCSDAAAEAARYGFTAVDRPEGFLVLAIASLGNEITELKTPPEDASSLEEKKVGVKGPGKKKTDESEHFVWKDDIKVPCGKLVASDHQDSPLEYNEYAVYDKKRARISYLVRVKYEEKEEKGAVIDTAE* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0717 815 Gene3D - 445 586 IPR036616 GO:0003950
Gso12g0717 815 ProSiteProfiles BRCT domain profile. 182 274 IPR001357 -
Gso12g0717 815 Pfam Poly(ADP-ribose) polymerase catalytic domain 597 800 IPR012317 GO:0003950
Gso12g0717 815 ProSiteProfiles PARP alpha-helical domain profile. 449 568 IPR004102 GO:0003950
Gso12g0717 815 SMART BRCT_7 184 264 IPR001357 -
Gso12g0717 815 Pfam PADR1 (NUC008) domain 97 147 IPR012982 -
Gso12g0717 815 SUPERFAMILY WGR domain-like 298 427 IPR036930 -
Gso12g0717 815 CDD parp_like 449 800 - -
Gso12g0717 815 Pfam Poly(ADP-ribose) polymerase, regulatory domain 450 583 IPR004102 GO:0003950
Gso12g0717 815 PANTHER POLY [ADP-RIBOSE] POLYMERASE 1 804 - -
Gso12g0717 815 SUPERFAMILY ADP-ribosylation 586 804 - -
Gso12g0717 815 SMART PADR1_2 95 148 IPR012982 -
Gso12g0717 815 Pfam BRCA1 C Terminus (BRCT) domain 184 261 IPR001357 -
Gso12g0717 815 SMART WGR_cls 333 416 IPR008893 -
Gso12g0717 815 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 449 585 IPR036616 GO:0003950
Gso12g0717 815 SUPERFAMILY BRCT domain 179 285 IPR036420 -
Gso12g0717 815 MobiDBLite consensus disorder prediction 726 749 - -
Gso12g0717 815 ProSiteProfiles WGR domain profile. 322 422 IPR008893 -
Gso12g0717 815 ProSiteProfiles SAP motif profile. 69 103 IPR003034 -
Gso12g0717 815 Pfam WGR domain 333 412 IPR008893 -
Gso12g0717 815 CDD WGR_PARP1_like 323 429 - -
Gso12g0717 815 PANTHER DNA LIGASE 1 804 - -
Gso12g0717 815 MobiDBLite consensus disorder prediction 1 45 - -
Gso12g0717 815 Gene3D BRCT domain 182 280 IPR036420 -
Gso12g0717 815 ProSiteProfiles PARP catalytic domain profile. 577 808 IPR012317 GO:0003950
Gso12g0717 815 Gene3D - 587 803 - -
Gso12g0717 815 CDD BRCT_PARP1 187 262 - -
Gso12g0717 815 MobiDBLite consensus disorder prediction 729 749 - -
Gso12g0717 815 Gene3D - 53 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0717 Gso-Chr12 7223789 7229544 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0717 K10798 - gmx:548024 1647.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0717 12 7223789 7229544 Gso11g1392 11 15954178 15960605 GST