Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1392 ATGAAGGTTCAAGAAACGAGGTCGCATGTTCATGCACCTGGGGAAGAAGAGAAGGTGATGACAAGGAAGCAGAAGGCTGAGTCCAAGGCACATGAAGTGGAGCATTCTCCAAAGAAGGCCAAGGTGGAAAAAGAAGATGGCCAAATCAACGGAAAATCTGAAACTGGAGTTGCAGAAGAATATGATGAGTTCTGCAAAGTAACAAACGAGCACCTTCCTTTGGAACAAATGAGAGAGATTATGGAGGCTAATAGCCTTGATTCTTCTGGCTCTGATCTTGAAATTGCAAGAAGATGCCAAGACTTGCTGTTTTATGGTGCATTGGACAAATGCTCGGTTTGCAATGGGAGTTTGGAGTTCGATGGAAGACGTTATGTTTGCAGAGGGTTCTACAGTGAGTGGGCTAGTTGCACTTTCAGCACCAGAAACCCTCCAAGGAAACAAGAACCCATTAAGTTACCTGATTCTGTTCAGGACTCTCTGGCTTCAGATTTGCTAAAGAAATATCAGGACCCGAGTCACAGGCCTCACAGGGATCTAGGCTTAGCTGAAAAACCCTTTACTGGAATGATGATATCTCTGATGGGTCGTCTTACTCGGACACATCATTATTGGAAAACAACTATTGAAAAGCATGGAGGAAAGGTGGCAAACTCTATAATTGGGGCAACTTGTTTGGTAGCTTCACCTGCTGAGCGAGAACGTGGTGGCACATCCAAACTTGCAGAAGCCATGGAGAGGGGTATACCAGTGGTTAGGGAGGCTTGGTTGATTGACAGCATCGAAAAGCAAGAACCTCAGCCTTTGGAATCTTATGATCTTGTCTCTGATCTTTCTGTGGATGGCAAGGGTATCCCCTGGGACAAACAAGATCCTGGGGAAGAGGCTATTGAATCACTCTCAGCAGAACTCAAGCTTTATGGGAAGAGAGGGGTCTATAAAGATTCCAAGTTGCAGGAACAAGGTGGAAAGATATTTGAAAGAGATGGGATATTATACAACTGTGCCTTCTCTGTTTGTGACCAAGGGCTAGGACTGAATGACTATTGCGTCATGCAACTGATTGTTGTCCCAGAGAATCCTTTGCATCTGTACTTTAAAAAAGGGAGAGTTGGCGATGATCCAAATGCCGAGGAGCAATTAGAAGAGTGGGACAATGTGGATGGTGCTCTGAAAGAGTTTGCGAGGCTCTTTGATGAAATAACAGGAAATGAGTTTGAACCTTGGGAAAGAGAGAAGAAGTTCCAGAAGAAGCCATTGAAGTTTTACCCCATTGACATGGATGATGGAGTTGAAGTTAGACATGGCGCACTAGGTCTTCGGCAGCTGGGGATAGCAGCGACACACTGCAAACTTGAGCCTTTGGTTGCAAATTTTATGAAGGTCTTGTGCAGCCAGGAGATATACAAGTATGCATTGATGGAGATGGGTTATGACTCTCCGGACCTTCCAATTGGAATGGTTACAAATCTTCATCTGAAAAGATGTGAGGACGTTCTCTTAGAATTCATAGACAAGATGAAATCACTGAAAGAAACTGGGCCCAAGGCTGAGGCTGTGTGGACTGATTTTAGCCAAAGATGGTTCACTCTGATGCACTCCACAAGGCCTTTCAATTTTAGAGATTATCAAGAGATTGCAGAGCATGCTGCTGCTGCGTTAGAGGGGGTGAGAGACATAACCCAGGCTTCTCACCTCATAGGAGATATGACAGGCTCAACCATTGATGACCCTTTATCAGAGACATACAAGAAATTGGGCTGCTCAATTTCTGCCTTGGACAAAAGTTCAGATGATTATGAGATGATTGTGAAATACCTTGAAAAAACTTATGAGCCGGTCAAAGTTGGTGACATTGAATATGGGGTGTCAGTGGAAAACATTTTTGCGGTTCAAACAGGTGGTTGCCCTTCCTATGAAGACATAGTAAAACTGCCAAATAAGGTTCTTCTATGGTGTGGATCACGAAGCTCAAACCTCTTGAGGCACTTACACAAGGGATTCTTGCCAGCAATATGCTCATTACCTGTTCCGGGTTATATGTTTGGCAAAGCTATTATCTGTTCTGATGCTGCAGCAGAGGCTGCAAGATATGGTTTTACAGCTGTGGACAGGCCAGAAGGGTTCTTAGTTTTGGCCATTGCTTCTCTAGGAAATGAGATTACCGAGTTGAAAAGCCCACCTGAGGATACATCATCTTTGGAGGAAAAGAAGGTTGGAGTGAAGGGACTGGGGAAGAAGAAAACAGATGAATCAGAGCATTTTGTTTGGAAAGACGATATAAAAGTTCCTTGTGGTAAACTAGTTGCCTCAGACCATCAAGATAGCCCCCTGGAATACAACGAGTATGCTGTCTACGATAAAAAGCAGGCACGCATAAGCTACTTGGTGGGAGTGAAGTATGAAGAGAAAGGTGCAGTGATTGACACAGCTGAATGA 2439 0.442 MKVQETRSHVHAPGEEEKVMTRKQKAESKAHEVEHSPKKAKVEKEDGQINGKSETGVAEEYDEFCKVTNEHLPLEQMREIMEANSLDSSGSDLEIARRCQDLLFYGALDKCSVCNGSLEFDGRRYVCRGFYSEWASCTFSTRNPPRKQEPIKLPDSVQDSLASDLLKKYQDPSHRPHRDLGLAEKPFTGMMISLMGRLTRTHHYWKTTIEKHGGKVANSIIGATCLVASPAERERGGTSKLAEAMERGIPVVREAWLIDSIEKQEPQPLESYDLVSDLSVDGKGIPWDKQDPGEEAIESLSAELKLYGKRGVYKDSKLQEQGGKIFERDGILYNCAFSVCDQGLGLNDYCVMQLIVVPENPLHLYFKKGRVGDDPNAEEQLEEWDNVDGALKEFARLFDEITGNEFEPWEREKKFQKKPLKFYPIDMDDGVEVRHGALGLRQLGIAATHCKLEPLVANFMKVLCSQEIYKYALMEMGYDSPDLPIGMVTNLHLKRCEDVLLEFIDKMKSLKETGPKAEAVWTDFSQRWFTLMHSTRPFNFRDYQEIAEHAAAALEGVRDITQASHLIGDMTGSTIDDPLSETYKKLGCSISALDKSSDDYEMIVKYLEKTYEPVKVGDIEYGVSVENIFAVQTGGCPSYEDIVKLPNKVLLWCGSRSSNLLRHLHKGFLPAICSLPVPGYMFGKAIICSDAAAEAARYGFTAVDRPEGFLVLAIASLGNEITELKSPPEDTSSLEEKKVGVKGLGKKKTDESEHFVWKDDIKVPCGKLVASDHQDSPLEYNEYAVYDKKQARISYLVGVKYEEKGAVIDTAE* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1392 812 Pfam WGR domain 333 412 IPR008893 -
Gso11g1392 812 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 449 585 IPR036616 GO:0003950
Gso11g1392 812 ProSiteProfiles BRCT domain profile. 182 274 IPR001357 -
Gso11g1392 812 CDD parp_like 449 800 - -
Gso11g1392 812 ProSiteProfiles PARP alpha-helical domain profile. 449 568 IPR004102 GO:0003950
Gso11g1392 812 Gene3D - 587 803 - -
Gso11g1392 812 Pfam Poly(ADP-ribose) polymerase catalytic domain 597 800 IPR012317 GO:0003950
Gso11g1392 812 SUPERFAMILY BRCT domain 179 285 IPR036420 -
Gso11g1392 812 SUPERFAMILY WGR domain-like 298 427 IPR036930 -
Gso11g1392 812 SMART PADR1_2 95 148 IPR012982 -
Gso11g1392 812 SMART BRCT_7 184 264 IPR001357 -
Gso11g1392 812 Pfam Poly(ADP-ribose) polymerase, regulatory domain 450 583 IPR004102 GO:0003950
Gso11g1392 812 Pfam PADR1 (NUC008) domain 97 147 IPR012982 -
Gso11g1392 812 PANTHER POLY [ADP-RIBOSE] POLYMERASE 1 803 - -
Gso11g1392 812 PANTHER DNA LIGASE 1 803 - -
Gso11g1392 812 ProSiteProfiles PARP catalytic domain profile. 577 808 IPR012317 GO:0003950
Gso11g1392 812 Pfam BRCA1 C Terminus (BRCT) domain 184 261 IPR001357 -
Gso11g1392 812 SUPERFAMILY ADP-ribosylation 586 803 - -
Gso11g1392 812 CDD WGR_PARP1_like 323 429 - -
Gso11g1392 812 Gene3D - 445 586 IPR036616 GO:0003950
Gso11g1392 812 CDD BRCT_PARP1 187 262 - -
Gso11g1392 812 SMART WGR_cls 333 416 IPR008893 -
Gso11g1392 812 Gene3D - 54 176 - -
Gso11g1392 812 MobiDBLite consensus disorder prediction 1 49 - -
Gso11g1392 812 ProSiteProfiles WGR domain profile. 322 422 IPR008893 -
Gso11g1392 812 Gene3D BRCT domain 182 280 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1392 Gso-Chr11 15954178 15960605 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1392 K10798 - gmx:100788978 1637.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1392 11 15954178 15960605 Gso11g1392 11 15954178 15960605 ECH
Gso12g0717 12 7223789 7229544 Gso11g1392 11 15954178 15960605 GST