Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0694 ATGTTCCTGTTCCAGAAGGGTTCTCATCTCCATCGTCTCCTTCTGTCAAAGAAGTACTACTACCATTTTCCGCTTCCACGCAACGCGGTTACCATCGCCGATTCCGTCGAACACCCCTCAGACGCCACCATAGCCAAACTAGTCCTCGAATCAGACCCACGCACCGTCTCCGAAGCCCTAACCAAGCCCACAATCCAATGGACCCCAGACCTAGTAAACAAAGTCATGAAGCGCCTCTGGAACCACGGGCCCAAGGCCCTCCAATTCTTCAAACACCTAGACCGCCACCACCCTTCCTACACCCACTCCCCCTCCTCCTTCGACCACGCCGTCGACATCGCGGCCCGCATGCGCGACTTCAACTCCGCCTGGGCCCTCGTGGGCCGCATGCGCTCCCTCCGCCTCGGCCCGTCTCCCAAAACCCTCGCCATCCTCGCCGAGCGCTACGCCTCCAACGGTAAGCCCCACCGCGCCGTCCGAACTTTCCTCTCCATGGCCGAGCACGGCATCCGCCAAGATCTCCACTCCTTCAACACCCTCCTCGACATCCTCTGCAAATCGAAGCGAGTCGAAACCGCGCACAGCCTCCTCAAAACGCTCACATCGAGGTTCAGACCCGACACCGTTACCTATAACATACTTGCGAACGGTTATTGCTTGATCAAACGCACGCCGATGGCTCTTCGGGTTTTGAAGGAGATGGTGCAGCGTGGGATTGAGCCTACGATGGTCACGTATAACACCATGCTGAAAGGGTATTTTAGGAGTAATCAGATTAAGGAGGCTTGGGAGTTTTATTTGGAGATGAAGAAGAGGAAGTGTGAGATTGATGTTGTGACTTACACCACTGTGATTCACGGGTTCGGGGTGGCGGGTGATGTTAAGAAAGCAAAAAGGGTTTTTCATGAGATGGTGAAGGAGGGTGTGGTTCCTAATGTTGCTACTTACAATGCTTTGATTCAGGTTTTGTGTAAGAAGGATAGTGTGGAGAATGCGGTGGTGGTTTTCGAGGAGATGGCGAGGGAGGGTGTGTGTGTGCCGAATGTGGTTACTTACAATGTTGTTATACGAGGTTTGTGTCATGTTGGGGACATGGAGAGGGCGTTGGGGTTTATGGAGAGGATGGGGGAGCATGGTTTGAGGGCTTGTGTTCAAACATATAATGTTGTGATTCGGTATTTTTGTGATGCCGGGGAGGTTGAGAAGGCTTTGGAGGTGTTTGGGAAGATGGGGGATGGGTCATGCTTGCCCAATTTGGACACTTATAATGTTTTGATTAGTGCGATGTTTGTCAGGAAGAAATCAGAGGATTTGGTGGTGGCTGGGAAGTTGTTGATGGAGATGGTTGATAGAGGGTTCTTGCCGCGCAAGTTTACTTTTAATAGGGTGTTGAATGGACTTGTTATTACTGGCAATCAGGATTTTGCAAAGGAGATACTGAGAATGCAGAGCAGGTGTGGCCGTGTTGTTCGGCGTTTGAAATTGTGA 1488 0.5168 MFLFQKGSHLHRLLLSKKYYYHFPLPRNAVTIADSVEHPSDATIAKLVLESDPRTVSEALTKPTIQWTPDLVNKVMKRLWNHGPKALQFFKHLDRHHPSYTHSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASNGKPHRAVRTFLSMAEHGIRQDLHSFNTLLDILCKSKRVETAHSLLKTLTSRFRPDTVTYNILANGYCLIKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGDVKKAKRVFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMAREGVCVPNVVTYNVVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEVEKALEVFGKMGDGSCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMEMVDRGFLPRKFTFNRVLNGLVITGNQDFAKEILRMQSRCGRVVRRLKL* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0694 495 Gene3D Tetratricopeptide repeat domain 203 306 IPR011990 GO:0005515
Gso12g0694 495 Gene3D Tetratricopeptide repeat domain 50 202 IPR011990 GO:0005515
Gso12g0694 495 Pfam PPR repeat 345 375 IPR002885 -
Gso12g0694 495 Pfam PPR repeat 308 339 IPR002885 -
Gso12g0694 495 Gene3D Tetratricopeptide repeat domain 307 379 IPR011990 GO:0005515
Gso12g0694 495 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 29 495 - -
Gso12g0694 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Gso12g0694 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Gso12g0694 495 TIGRFAM PPR: pentatricopeptide repeat domain 386 418 IPR002885 -
Gso12g0694 495 TIGRFAM PPR: pentatricopeptide repeat domain 350 380 IPR002885 -
Gso12g0694 495 TIGRFAM PPR: pentatricopeptide repeat domain 279 313 IPR002885 -
Gso12g0694 495 TIGRFAM PPR: pentatricopeptide repeat domain 315 348 IPR002885 -
Gso12g0694 495 TIGRFAM PPR: pentatricopeptide repeat domain 209 242 IPR002885 -
Gso12g0694 495 TIGRFAM PPR: pentatricopeptide repeat domain 176 198 IPR002885 -
Gso12g0694 495 TIGRFAM PPR: pentatricopeptide repeat domain 244 278 IPR002885 -
Gso12g0694 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 203 IPR002885 -
Gso12g0694 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 455 IPR002885 -
Gso12g0694 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Gso12g0694 495 Gene3D Tetratricopeptide repeat domain 380 493 IPR011990 GO:0005515
Gso12g0694 495 PANTHER OS02G0679200 PROTEIN 29 495 - -
Gso12g0694 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Gso12g0694 495 Pfam PPR repeat family 173 219 IPR002885 -
Gso12g0694 495 Pfam PPR repeat family 383 429 IPR002885 -
Gso12g0694 495 Pfam PPR repeat family 241 288 IPR002885 -
Gso12g0694 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Gso12g0694 495 SUPERFAMILY HCP-like 122 270 - -
Gso12g0694 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0694 Gso-Chr12 6919011 6921003 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0694 136 487 Glycosyltransferase AT1G05670 23.729 2.20e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0694 - - gmx:100808784 988.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0694 12 6919011 6921003 Gso11g1424 11 16395692 16399456 GST