Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1424 ATGTTCCTGTTCCAGAAGGCTTCCGCTTCTCATGTCCAGCTTCTGATTGGGTCAAAGAAGTACTTTCAGTTCCATCTTCCCCGTGACGCAGTTCACATTGCCGAGGCCTCAGACGCAACCATAGCCAAACTAGTCCTGGAATCAGACCCACGCACCCTCTCCGAAGCCCTAACCAAGCCCAGAATCCACTGGACCCCAGAGCTAGTAAACAAAACCCTTAAGCGCCTCTGGAACCACGGGCCCAAGGCCCTCCTATTCTTCAAACACCTCGACCGCCACCTCCCTTCCTACACCCACTCCCCCTCCTCCTTCGACCACGCCGTCGACATCGCGGCCCGCATGCGCGACTTCAACTCCGCCTGGGCCCTCGTGGGCCGCATGCGCTCCCTCCGCCTCGGCCCGTCTCCCAAAACCCTCGCTATCCTCGCCGAGCGCTACGCCTCCATCGGCAAGCCCCACCGCGCCGTCCGCACCTTCCTCTCCATGCACGAGCACGGCCTCCACCAAGATCTCCACTCCTTCAACACCCTCCTTGACATCCTCTGCAAATCGAACCGCGTCGAAACCGCTCACGACCTCCTCAGAACTCTCAAATCTAGGTTCAGACCCGACACCGTTAGTTACAACATTCTCGCGAACGGTTATTGCTTGAAAAAACGCACGCCGATGGCGCTGCGGGTTTTGAAGGAGATGGTACAGCGTGGGATTGAGCCTACGATGGTCACGTATAACACCATGCTGAAGGGGTATTTTAGGAGTAATCAGATTAAGGAGGCTTGGGAGTTTTACTTGGAGATGAAGAAGAGGAAGTGTGAGATTGATGTTGTGTCTTACACCACTGTGATTCACGGGTTTGGAGTGGCGGGTGAGGTTAAGAAAGCAAAAAGGGTTTTTGATGAGATGGTGAAGGAGGGTGTGGCTCCTAATGTTGCTACTTACAATGCTTTGATTCAGGTTTTTTGTAAGAAGGATAGTGTGCAGAACGCAGTGGCGGTTTTTGAGGAGATGGTGAGGGAGGGGGTGTGTTCGCCGAATGTGGTTACTTTCAATGTTGTTATACGAGGTTTGTGTCATGTTGGGGACATGGAGAGGGCGTTGGGGTTTATGGAGAGGATGGGGGAGCATGGTTTGAGGGCTAGTGTTCAGACTTATAATGTTGTGATTCGGTATTTTTGTGATGCTGGGGAGATTGAGAAGGGTTTGGAGGTGTTTGGGAAGATGGGGGATGGGTTGTGTTTGCCGAATTTGGATACTTATAATGTTCTGATTAGTGCGATGTTTGTGAGGAAGAAATCGGAGGATTTGGTGGTGGCTGGGAAGTTGTTGATGGAGATGGTTGAGAGAGGCTTCTTGCCACGCAAGTTTACTTTTAATAGGGTGCTAAATGGACTTGTTATTACTGGCAATCAGGATTTTGCAAAGGATATACTCAGAATGCAGAGCAGGTGTGGCCGTGTTGTTCGGCGTTTGAAATTGTGA 1479 0.5159 MFLFQKASASHVQLLIGSKKYFQFHLPRDAVHIAEASDATIAKLVLESDPRTLSEALTKPRIHWTPELVNKTLKRLWNHGPKALLFFKHLDRHLPSYTHSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASIGKPHRAVRTFLSMHEHGLHQDLHSFNTLLDILCKSNRVETAHDLLRTLKSRFRPDTVSYNILANGYCLKKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVSYTTVIHGFGVAGEVKKAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAVFEEMVREGVCSPNVVTFNVVIRGLCHVGDMERALGFMERMGEHGLRASVQTYNVVIRYFCDAGEIEKGLEVFGKMGDGLCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMEMVERGFLPRKFTFNRVLNGLVITGNQDFAKDILRMQSRCGRVVRRLKL* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1424 492 TIGRFAM PPR: pentatricopeptide repeat domain 206 239 IPR002885 -
Gso11g1424 492 TIGRFAM PPR: pentatricopeptide repeat domain 312 345 IPR002885 -
Gso11g1424 492 TIGRFAM PPR: pentatricopeptide repeat domain 241 275 IPR002885 -
Gso11g1424 492 TIGRFAM PPR: pentatricopeptide repeat domain 173 199 IPR002885 -
Gso11g1424 492 TIGRFAM PPR: pentatricopeptide repeat domain 383 407 IPR002885 -
Gso11g1424 492 TIGRFAM PPR: pentatricopeptide repeat domain 347 379 IPR002885 -
Gso11g1424 492 TIGRFAM PPR: pentatricopeptide repeat domain 276 310 IPR002885 -
Gso11g1424 492 Pfam PPR repeat family 238 285 IPR002885 -
Gso11g1424 492 Pfam PPR repeat family 380 426 IPR002885 -
Gso11g1424 492 Pfam PPR repeat family 308 358 IPR002885 -
Gso11g1424 492 PANTHER OS02G0679200 PROTEIN 31 492 - -
Gso11g1424 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Gso11g1424 492 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 31 492 - -
Gso11g1424 492 Gene3D Tetratricopeptide repeat domain 51 198 IPR011990 GO:0005515
Gso11g1424 492 Gene3D Tetratricopeptide repeat domain 199 302 IPR011990 GO:0005515
Gso11g1424 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Gso11g1424 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Gso11g1424 492 Pfam PPR repeat 206 236 IPR002885 -
Gso11g1424 492 Pfam PPR repeat 173 199 IPR002885 -
Gso11g1424 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 452 IPR002885 -
Gso11g1424 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Gso11g1424 492 Gene3D Tetratricopeptide repeat domain 303 373 IPR011990 GO:0005515
Gso11g1424 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 200 IPR002885 -
Gso11g1424 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Gso11g1424 492 Gene3D Tetratricopeptide repeat domain 374 490 IPR011990 GO:0005515
Gso11g1424 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1424 Gso-Chr11 16395692 16399456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1424 134 487 Glycosyltransferase AT1G05670 29.213 1.99e-47 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1424 - - gmx:100306721 981.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0694 12 6919011 6921003 Gso11g1424 11 16395692 16399456 GST