Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0680 ATGGAAACGGTGGCCGCCGCTTTTTTCTTCGCCGCCGTGGTTCTGTCGGCGGTTGGCGGGTCGCCGGTGACTCTGACGCTGGAAAGAGCGTTCCCTTCGAATGATGGGGTGGAATTGAGTGAGCTCAGAGCGAGGGACAGCCTCAGACATCGTAGAATGTTGCAGTCTACTAACTACGTTGTAGATTTCCCTGTCAAAGGCACCTTCGATCCCTCACAAGTCGGGCTTTACTATACAAAGGTGAAATTGGGTACTCCTCCAAGGGAATTCTATGTGCAGATTGACACTGGCAGTGATGTTCTCTGGGTTAGTTGTGGGTCCTGCAACGGTTGTCCTCAGACAAGTGGGCTCCAAATTCAGCTCAATTACTTTGATCCTCGGAGTTCATCAACATCTTCGTTGATCTCTTGTTCAGACCGAAGGTGCAGGAGTGGAGTACAGACCTCGGATGCAAGCTGTTCCAGTCAGAACAACCAGTGCACTTACACATTTCAGTATGGAGATGGTAGTGGGACATCAGGCTATTATGTCTCAGACTTGATGCATTTTGCTGGTATTTTTGAGGGAACCTTGACAACAAATTCTTCGGCATCTGTAGTTTTTGGTTGTAGCATCCTGCAGACTGGGGACTTAACAAAGTCTGAGAGAGCAGTTGATGGGATATTCGGATTTGGGCAACAGGGCATGTCTGTCATTTCCCAACTCTCGTTGCAGGGAATAGCACCAAGAGTGTTCTCCCATTGCCTGAAAGGAGATAATAGTGGTGGGGGCGTATTGGTTCTTGGTGAAATTGTGGAGCCAAACATAGTTTATAGTCCACTTGTTCAATCACAGCCACATTACAATTTAAATCTGCAGAGCATCTCTGTTAATGGCCAAATTGTGCCAATTGCCCCTGCAGTTTTTGCTACATCAAACAACAGAGGTACCATTGTTGATTCTGGAACAACTTTGGCATACCTTGCAGAAGAGGCTTACAATCCCTTTGTCAATGCGATTACAGCTCTTGTTCCACAATCTGTACGCAGTGTTCTTTCCAGAGGAAATCAGTGTTACTTAATAACCACCTCCAGCAATGTTGACATTTTTCCACAAGTAAGTCTGAACTTCGCTGGTGGTGCATCTCTGGTTTTAAGACCACAGGATTACCTTATGCAGCAGAATTATATTGGCGAGGGATCAGTGTGGTGTATTGGCTTTCAGAGAATTCCGGGGCAAAGTATAACTATTCTAGGAGACCTCGTATTAAAAGACAAAATTTTTGTCTACGATCTTGCTGGTCAACGCATTGGATGGGCTAACTATGATTGTTCATTGCCGGTTAATGTATCTGCATCAGCTGGTAGGGGCAGAAGTGAGTTTGTGGACGCGGGAGAGCTAAGTGGCAGCTCTTCTTTACGTGCTGGGCTTCACATGTTGATAAATACACTGTTCCTTGCTCTCTTCATGCACATAACTTTAATTTTGTAG 1470 0.4578 METVAAAFFFAAVVLSAVGGSPVTLTLERAFPSNDGVELSELRARDSLRHRRMLQSTNYVVDFPVKGTFDPSQVGLYYTKVKLGTPPREFYVQIDTGSDVLWVSCGSCNGCPQTSGLQIQLNYFDPRSSSTSSLISCSDRRCRSGVQTSDASCSSQNNQCTYTFQYGDGSGTSGYYVSDLMHFAGIFEGTLTTNSSASVVFGCSILQTGDLTKSERAVDGIFGFGQQGMSVISQLSLQGIAPRVFSHCLKGDNSGGGVLVLGEIVEPNIVYSPLVQSQPHYNLNLQSISVNGQIVPIAPAVFATSNNRGTIVDSGTTLAYLAEEAYNPFVNAITALVPQSVRSVLSRGNQCYLITTSSNVDIFPQVSLNFAGGASLVLRPQDYLMQQNYIGEGSVWCIGFQRIPGQSITILGDLVLKDKIFVYDLAGQRIGWANYDCSLPVNVSASAGRGRSEFVDAGELSGSSSLRAGLHMLINTLFLALFMHITLIL* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0680 489 ProSiteProfiles Peptidase family A1 domain profile. 77 433 IPR033121 -
Gso12g0680 489 PANTHER ASPARTYL PROTEASES 4 454 IPR001461 GO:0004190|GO:0006508
Gso12g0680 489 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 4 454 - -
Gso12g0680 489 Gene3D Acid Proteases 51 263 IPR021109 -
Gso12g0680 489 CDD pepsin_A_like_plant 77 437 IPR034161 -
Gso12g0680 489 SUPERFAMILY Acid proteases 74 439 IPR021109 -
Gso12g0680 489 Pfam Xylanase inhibitor C-terminal 280 433 IPR032799 -
Gso12g0680 489 Gene3D Acid Proteases 264 442 IPR021109 -
Gso12g0680 489 Pfam Xylanase inhibitor N-terminal 77 262 IPR032861 -
Gso12g0680 489 PRINTS Pepsin (A1) aspartic protease family signature 83 103 IPR001461 GO:0004190|GO:0006508
Gso12g0680 489 PRINTS Pepsin (A1) aspartic protease family signature 310 321 IPR001461 GO:0004190|GO:0006508
Gso12g0680 489 PRINTS Pepsin (A1) aspartic protease family signature 409 424 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0680 Gso-Chr12 6686172 6691356 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0680 51 438 Miscellaneous Gene Families AT1G44130 25.432 2.62e-34 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0680 - K00924 gmx:100789004 947.192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0680 12 6686172 6691356 Gso11g1438 11 16635443 16640390 GST
Gso12g1508 12 38456080 38461062 Gso12g0680 12 6686172 6691356 PCT
Gso11g3334 11 49123608 49128568 Gso12g0680 12 6686172 6691356 PCT
Gso12g0680 12 6686172 6691356 Gso12g1508 12 38456080 38461062 PCT
Gso12g0680 12 6686172 6691356 Gso11g3334 11 49123608 49128568 PCT