Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3334 ATGGGGGCTGCTTTTGTTATCTCCGTCTTGATGTTTGCCGCGTTAGCTGGCGGATCTCCGGCGAGTCTGACTTTGGAGAGAGCGTTTCCGACGAATCACACAGTGGAGCTGAGTCAGCTGAGAGCTCGTGACGCGTTGAGGCATCGCAGAATGTTGCAGTCTTCAAACGGCGTCGTCGATTTCTCCGTTCAAGGCACCTTCGATCCCTTCCAAGTCGGGCTCTACTATACAAAAGTGCAGTTGGGTACTCCTCCAGTGGAATTTAATGTGCAGATTGACACTGGCAGTGATGTTCTCTGGGTTAGTTGTAACTCCTGCAGTGGTTGTCCTCAAACAAGTGGGCTTCAGATTCAGCTAAATTTTTTTGACCCCGGGAGTTCATCAACATCTTCAATGATCGCTTGTTCTGACCAAAGGTGCAATAATGGAATACAATCATCAGATGCCACATGTTCCAGCCAGAATAACCAGTGCTCCTACACTTTCCAGTATGGAGATGGGAGTGGGACATCAGGCTATTATGTGTCAGATATGATGCATTTGAACACCATTTTTGAGGGATCCGTGACCACGAATTCTACTGCACCTGTAGTTTTTGGTTGTAGCAACCAGCAAACTGGGGACTTGACAAAGTCTGATAGAGCAGTTGATGGGATATTTGGATTTGGGCAACAGGAAATGTCTGTCATTTCTCAACTTTCCTCACAAGGAATTGCTCCAAGAGTATTCTCACATTGTCTGAAAGGAGATAGTAGTGGTGGGGGCATATTGGTTCTTGGTGAGATTGTGGAGCCAAACATAGTCTACACTTCACTTGTTCCAGCACAGCCTCATTACAATTTAAATCTACAGAGCATCGCTGTCAATGGCCAGACATTGCAAATTGATTCATCAGTTTTTGCAACATCAAACAGCAGAGGTACCATTGTTGATTCTGGAACAACTTTGGCGTACCTTGCGGAAGAGGCTTATGATCCCTTTGTCTCTGCGATTACAGCTTCAATTCCACAATCTGTACACACTGTTGTTTCCAGGGGAAATCAGTGTTATTTAATCACATCCAGTGTCACTGAAGTTTTTCCTCAAGTAAGTCTGAACTTTGCTGGTGGTGCATCTATGATTTTAAGGCCTCAGGACTACCTGATACAGCAGAATTCCATTGGTGGTGCAGCAGTGTGGTGTATTGGCTTTCAGAAAATCCAGGGTCAAGGGATAACAATTCTAGGAGATCTCGTATTAAAAGACAAAATTGTTGTTTATGATCTGGCTGGTCAACGCATTGGATGGGCTAACTATGACTGTTCTTTGTCGGTGAATGTCTCTGCAACAACTGGCACTGGCAGAAGTGAATTTGTGAATGCTGGTGAGATAGGTGGAAACATCTCTTTACGTGATGGACTTAAGTTGACAAGGACAGGGTTCTTGGCTTTCTTTGTGCATCTAACGCTAATTTACTGCTTCGGATTCTTATAG 1473 0.446 MGAAFVISVLMFAALAGGSPASLTLERAFPTNHTVELSQLRARDALRHRRMLQSSNGVVDFSVQGTFDPFQVGLYYTKVQLGTPPVEFNVQIDTGSDVLWVSCNSCSGCPQTSGLQIQLNFFDPGSSSTSSMIACSDQRCNNGIQSSDATCSSQNNQCSYTFQYGDGSGTSGYYVSDMMHLNTIFEGSVTTNSTAPVVFGCSNQQTGDLTKSDRAVDGIFGFGQQEMSVISQLSSQGIAPRVFSHCLKGDSSGGGILVLGEIVEPNIVYTSLVPAQPHYNLNLQSIAVNGQTLQIDSSVFATSNSRGTIVDSGTTLAYLAEEAYDPFVSAITASIPQSVHTVVSRGNQCYLITSSVTEVFPQVSLNFAGGASMILRPQDYLIQQNSIGGAAVWCIGFQKIQGQGITILGDLVLKDKIVVYDLAGQRIGWANYDCSLSVNVSATTGTGRSEFVNAGEIGGNISLRDGLKLTRTGFLAFFVHLTLIYCFGFL* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3334 490 PANTHER ASPARTYL PROTEASES 3 451 IPR001461 GO:0004190|GO:0006508
Gso11g3334 490 SUPERFAMILY Acid proteases 70 437 IPR021109 -
Gso11g3334 490 Pfam Xylanase inhibitor C-terminal 278 430 IPR032799 -
Gso11g3334 490 Gene3D Acid Proteases 262 441 IPR021109 -
Gso11g3334 490 Pfam Xylanase inhibitor N-terminal 75 260 IPR032861 -
Gso11g3334 490 Gene3D Acid Proteases 53 261 IPR021109 -
Gso11g3334 490 CDD pepsin_A_like_plant 75 434 IPR034161 -
Gso11g3334 490 PRINTS Pepsin (A1) aspartic protease family signature 81 101 IPR001461 GO:0004190|GO:0006508
Gso11g3334 490 PRINTS Pepsin (A1) aspartic protease family signature 308 319 IPR001461 GO:0004190|GO:0006508
Gso11g3334 490 PRINTS Pepsin (A1) aspartic protease family signature 406 421 IPR001461 GO:0004190|GO:0006508
Gso11g3334 490 ProSiteProfiles Peptidase family A1 domain profile. 75 430 IPR033121 -
Gso11g3334 490 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 3 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3334 Gso-Chr11 49123608 49128568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3334 49 435 Miscellaneous Gene Families AT1G44130 26.617 1.43e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3334 - K00924 gmx:100795803 977.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1508 12 38456080 38461062 Gso11g3334 11 49123608 49128568 GST
Gso11g3334 11 49123608 49128568 Gso12g0680 12 6686172 6691356 PCT
Gso11g3334 11 49123608 49128568 Gso11g1438 11 16635443 16640390 PCT
Gso12g0680 12 6686172 6691356 Gso11g3334 11 49123608 49128568 PCT
Gso11g1438 11 16635443 16640390 Gso11g3334 11 49123608 49128568 PCT