Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0677 ATGGTTCCGTTCCCGTCAGAGAACGGCGTCGAAGGAGACGACGAGAGAGAAGAGGAAGACGAAGAGGAAGAAGAAGAAGAGGAAGACGAAGAAGTGGTGGAAGATGAAGAAGACGAAGAGGAACCGAGGCTCAAGTACCAGAGAATGGGAGGTAGCATCCCTTCGCTGCTTGCGAGTGACGCGGCGTCGTGTATCGCCGTCGCGGAGCGCATGATCGCTCTCGGCACTCACGGCGGCACCGTTCACATCCTCGATTTTCTCGGGAATCAGGTTAAGGAATTCTCTGCACATGCTTCTGTTGTCAATGACCTTAGCTTTGACACAGAAGGTGAATATATTGGAAGCTGTTCTGATGATGGATCAGTTGTGATAAACAGTCTTTTCACTGATGAGAAATTGAAGTTTGAGTACCATCGGCCGATGAAGGCAGTTGCGTTGGATCCAGATTATGCAAGGAAAATGTCTAGGAGATTTGTTGCTGGTGGTTTGGCTGGTCATTTATATTTAAATTCAAAGAAATGGTTAGGATACCGTGATCAGGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAATGGAGAGCAAGTCTTGTTGCTTGGGTTAATGATGCAGGAGTGAAGGTTTATGATACTGCCAATGACCAGCGTATTACATTTATTGAAAAACCACGGGGGAGCCCACGCCCTGAGCTTTTGCTTCCTCACCTGGTTTGGCAGGATGACAGCCTCTTAGTTATTGGCTGGGGAACATCTGTCAAAATTGCTTCAATTAGGACAAATCACCAAAAAGCAGCCAATGGGTCATTCAGGCAAGTTCCTTTGACTGGTATGACCCAGGTGGATATTGTGGCATCTTTCCAAACCAGCTATTTCATTTCAGGACTTGCTCCCTTTGGTGATGCTTTGGTTGTTCTAGCATATATTCCTGGAGAAGAAGATGGAGATAAGGATTTTAGTAGCACCGCTCCTTTACGGCAGGGCAATGCACAAAGACCAGAAGTAAGAATAGTAACATGGAATAATGATGAGCTTTCTACAGATGCTCTTCCAGTACATGGGTTTGAGCATTACAGGGCGAAGGACTATTCTCTTGCTCATGCTCCCTTCTCAGGTAGCAGTTATGCTGGGGGTCAGTGGGCTGCAGGTGATGAACCACTTTACTATATTGTATCTCTGAAGGATGTAGTTATTGCCAAACCAAGGGATACTGAAGATCATATTGCATGGCTTCTTCAGCACGGGTGGCATGAAAAAGCTTTGGCTGTGGTTGAATCTGGCCAGGGACGGAGTGAACTACTTGATGAGGTGGGATCTAGGTACCTTGATCATCTGATTGTGGAAAGAAAATACAGGGAAGCAGCATCTTTGTGTCCCAAGTTGCTTCGAGGATCAGCTTCAGCATGGGAGAGATGGGTTTTCCACTTTGCACATCTTCGTCAGCTCCCTGTTTTAGTTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTACGAGGTTGCTCTTGTTGCATTGGCTACAAATCCTTCTTTTCATAAGGATCTCTTGTCCACTGTAAAATCCTGGCCATCTGTAATTTATTCTGCTTTACCTGTAATTTCAGCCATTGAACCTCAGCTAAATACTTCATCCATGACTGATTCACTTAAGGAGGCATTAGCAGAGTTGTATGTAATCGATGGGCAATTTGAGAAAGCCTTCTTGTTGTATGCTGATCTTTTGAAGCCAGAAGTATTTGATTTTATTGATAAACATAACCTACACGATGCTATTCGTGGAAAGGTTGTCCAACTAATGAGGCTAGATTGCAAGCGCGCTGTTCCTTTGTTAATCCAGAATAGGGACTTAATAAGTCCACCTGAAGTTGTGAATCAACTTCTAAATGCAGATGATAAGAGTGATTGTAGATATTTTTTACATTTATATCTCCACTCATTATTTGAAGTAAATCCTCATGCTGGGAAAGACTTCCATGATATGCAGGTAGAACTCTATGCGGACTATGATCCAAAGATGCTGCTACCTTTTCTCCGTAGCAGTCAACACTACACCCTTGAGAAGGCTTACGAAATTTGCATTAAAAGAGACCTATTGAGGGAGCAAGTCTTCATCCTAGGAAGGATGGGAAACTCGAAACAAGCCCTAGCTGTTATTATAAACAAATTGGGGGATATAGAGGAGGCCGTAGAGTTTGTCACCATGCAGCATGATGATGAACTTTGGGAAGAATTAATCAAGCAATGCCTTCACAAACCTGAAATGGTGGGCATATTATTGGAGCACACAGTTGGAAATCTTGATCCCCTTTACATTGTAAATAAGGTTCCTAATGGGTTGGAAATCCCTCGGCTCCGGGATCGGCTGGTTAAGATTATCACCGACTACAGGACTGAAACATCGCTCAGACACGGATGCAATGATATCATTAAGGCGGACTGTGTCAATCTTTTAATTAAGTATTACAAAGAGGCAAGGCATGGGATTTCTTTAGGTAATGAAGATGAGCCGCGGGTTAAAATGAGTGATACTCGTGCTTCTCAGGTATTTGACAAATCTCCAAGTCTGAGAACTGTGGAGTTGAAGTCAAAGACTAGGGGAGGTGGAAGATGTTGTATATGTTTCGATCCATTTTCTATACAGAATGTATCGGTCATTGTTTTCTTTTGCTGTCATGGTTATCACACAACTTGTCTCATGGATTCGTCTTACACTAGTAGTAACCAGAAAGAGGTCCAAGCCACGTCCCTAGAGGCGGAAACGTATGATGATTACAATGGTTATGAGGAAGATGCTAGTGAGGATGATGAAGAAGCCAAGTCTGGTGGTCCTCGTATGCGTTGTATATTGTGTACTACTGCTGGCTAG 2874 0.437 MVPFPSENGVEGDDEREEEDEEEEEEEEDEEVVEDEEDEEEPRLKYQRMGGSIPSLLASDAASCIAVAERMIALGTHGGTVHILDFLGNQVKEFSAHASVVNDLSFDTEGEYIGSCSDDGSVVINSLFTDEKLKFEYHRPMKAVALDPDYARKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGSIHAVKWRASLVAWVNDAGVKVYDTANDQRITFIEKPRGSPRPELLLPHLVWQDDSLLVIGWGTSVKIASIRTNHQKAANGSFRQVPLTGMTQVDIVASFQTSYFISGLAPFGDALVVLAYIPGEEDGDKDFSSTAPLRQGNAQRPEVRIVTWNNDELSTDALPVHGFEHYRAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSLKDVVIAKPRDTEDHIAWLLQHGWHEKALAVVESGQGRSELLDEVGSRYLDHLIVERKYREAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKDLLSTVKSWPSVIYSALPVISAIEPQLNTSSMTDSLKEALAELYVIDGQFEKAFLLYADLLKPEVFDFIDKHNLHDAIRGKVVQLMRLDCKRAVPLLIQNRDLISPPEVVNQLLNADDKSDCRYFLHLYLHSLFEVNPHAGKDFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAYEICIKRDLLREQVFILGRMGNSKQALAVIINKLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDIIKADCVNLLIKYYKEARHGISLGNEDEPRVKMSDTRASQVFDKSPSLRTVELKSKTRGGGRCCICFDPFSIQNVSVIVFFCCHGYHTTCLMDSSYTSSNQKEVQATSLEAETYDDYNGYEEDASEDDEEAKSGGPRMRCILCTTAG* 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0677 957 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 613 760 IPR000547 GO:0006886|GO:0016192
Gso12g0677 957 Gene3D Tetratricopeptide repeat domain 607 832 IPR011990 GO:0005515
Gso12g0677 957 PANTHER VACUOLAR PROTEIN SORTING VPS41 1 956 IPR045111 GO:0006623
Gso12g0677 957 SUPERFAMILY WD40 repeat-like 59 252 IPR036322 GO:0005515
Gso12g0677 957 MobiDBLite consensus disorder prediction 11 40 - -
Gso12g0677 957 Coils Coil 16 39 - -
Gso12g0677 957 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 41 HOMOLOG 1 956 - -
Gso12g0677 957 SUPERFAMILY RING/U-box 867 910 - -
Gso12g0677 957 SMART WD40_4 87 126 IPR001680 GO:0005515
Gso12g0677 957 Gene3D - 7 282 IPR015943 GO:0005515
Gso12g0677 957 SMART ring_2 873 953 IPR001841 -
Gso12g0677 957 PIRSF Vps41 1 914 IPR016902 GO:0034058|GO:0046907
Gso12g0677 957 Pfam Region in Clathrin and VPS 613 756 IPR000547 GO:0006886|GO:0016192
Gso12g0677 957 MobiDBLite consensus disorder prediction 1 44 - -
Gso12g0677 957 SMART CLH_2 613 760 IPR000547 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0677 Gso-Chr12 6643155 6660079 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0677 K20184 - gmx:100804711 1868.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0677 12 6643155 6660079 Gso11g1440 11 16663595 16674085 GST